1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCGATTCGGTCCTACCTTGGAATCAAAAGAGAAACATGCTAACCAAACAACACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAGgttttctttgtttatatttttctgcattgactagttgaatttctagtgtctaacttacatgctcaccttgtgaagcatatgatgcaaagattgaaagctatggatttgttcatttattcctcagggttatgatttggattatcttgccatttgttag
species | Vitis vinifera |
transcript | Vv15s0046g02460.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAG CTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAACEST: gi|294965942|gb|GW839281.1|GW839281
genomic: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAGgttttctttg ... catttgttagCTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAAC
EST: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAG CTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAACEST: gi|110712809|gb|EE088181.1|EE088181
genomic: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAGgttttctttg ... catttgttagCTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAAC
EST: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAG CTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAACEST: gi|37188361|gb|CF607710.1|CF607710
genomic: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAGgttttctttg ... catttgttagCTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAAC
EST: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAG CTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAACEST: gi|161714434|gb|FC064433.1|FC064433
genomic: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAGgttttctttg ... catttgttagCTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAAC
EST: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAG CTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAAC
genomic: CACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAGgttttctttg ... catttgttagCTAACAGGTGAAGTCATCTTGGTATACCGAGGTAACTGCAGTTTCACAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGATTCGGTCCTACCTTGGAATCAAAAGAGAAACATGCTAACCAAACAACACTCACTCTTGCAGATCCTCCTGATTGTTGCAGTACACCCAAAAACAAGgttttctttgtttatatttttctgcattgactagttgaatttctagtgtctaacttacatgctcaccttgtgaagcatatgatgcaaagattgaaagctatggatttgttcatttattcctcagggttatgatttggattatcttgccatttgttag
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