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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagatctaactttgtcaataggtaaagcgattgagttct...

Basic information

species Vitis vinifera
transcript Vv15s0046g02420.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g44630.2 (Oryza sativa), 5'ss of exon 3
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagatctaactttgtcaataggtaaagcgattgagttct--
 || || |||||||||||||| |||||||| ||  | || |||||||| || ||||| || |||||||||||||| |||||||| ||||||||||| |||||||||||  | |  | || |    | |   | | || | |   |   || ||| || |  |  |   |  | || || |  |  ||   ||| |   |   
TGACGGTCTTGGTGCTGAGATTGTTGGCACCTTCATCCTGGTCTACACCGTCTTCTCAGCCACTGATGCCAAGAGGAATGCCAGGGACTCACATGTTCCTgtaagtatccttctcctttttgcagtgtga-tatgtgaaagttcagtagtagttagtgtggtctaatgagttatg-cactgtgataactaattcatcaccaa

upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AC209208.3_FGT002 (Zea mays), 5'ss of exon 2
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctc-tctgtatgtatgc-atatgtgtggtttgttttatagatctaactttgtcaataggtaaagcgattgagttct
 ||||| ||||| |||||||| |||||||| ||  | || |||||||| || ||||| || || ||||||||||| |||||||| ||||| ||||| |||||||||| | | || | |    |   ||  | |||     ||  |||  | || || | ||  |    || |        ||| ||||    ||  | ||  
TGATGGCCTTGGCGCTGAGATTGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCAGCCACCGATGCCAAGAGGAATGCCAGGGACTCCCATGTTCCTgtaagtactcttccacttcccttttcctagtttgttcagttgttatagttctgcttggattagtttggcttagcacacatatatgtaattgaatcaactt--

upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G392975_T03 (Zea mays), 5'ss of exon 2
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgtttta--tagatctaactttgtcaataggtaaagcgattgagttct--
 || || ||||| || ||||| |||||||| ||  | || |||||||| || ||||| || || ||||||||||| || ||||| ||||| |||||||| ||||||| | | | || ||   |  | ||   || |||     | |  | | | || || |  |     |  | |    || |  |||   ||    ||| |  
GGACGGCCTTGGCGCAGAGATCGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactcttcgtcctttcgt--tttcctagtttgttcagctgttagggttctgcttgaattcacatttgcatatctaaaatataagatgac--ggttgtaa

upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G37730.1 (Glycine max), 5'ss of exon 2
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaag-tattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagat-----ctaactttg--tcaataggtaaagcgattgagttct------------------------
 ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| || |||||| | |||  ||  || || |  |  ||       || || |||     |  ||||  ||||| ||        | | ||  |   |   ||| | | || | || |                        
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTgtatgctatactctttccttttccccactacaatattgcattcattccattaatttggcttataaatgagtatatattctgactttgttattaatgtggttaatttatgatggtatgatataataattgtag

upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G01860.1 (Glycine max), 5'ss of exon 2
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagat--cta-actttg--tcaataggtaaagcgattgagttct------------------------
 ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||| || || |||||| ||||| |  | || |  |  ||  ||       ||| |||     |  |||| |||||| ||  ||| | | ||  |   ||  ||| | | || |  | |                        
TGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTgtatgtattctttcccactacaatattgct-------tattcattccactaatttggtttataaatggctatattctgactttgtaattaatgtggttaatgtatgatgctatgatataataattgtag

upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G02530.1 (Glycine max), 5'ss of exon 2
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagatctaactttgtcaa-taggta-----aagcgattgagttct
 ||||| ||||| || ||||| |||||||||||| ||||||| |||||||| ||||| || ||||||||||||||||| || |||||||| || ||||| |||  |||||  | || ||  ||  |||||    ||   ||||  | |  |      | | || |   |  ||| | |  ||||||      || || | |  |  
TGATGGCCTTGGAGCCGAGATTGTTGGCACTTTTATTCTTGTTTACACTGTCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTCCCGgtacctatttatcatcttt--attctctcttctcattcgtgcaactttaagccaaagtgtgtaaac--aggtttattagctaggtagaagagagagactaaact--

upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G42950.1 (Glycine max), 5'ss of exon 2
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagatctaactttgtcaa-taggtaaagcgattgagttct---
 ||||| ||||| |||||||| |||||||| ||| ||||||| ||||| || ||||| || ||||||||||||||||| || |||||||| || || || |||   |||   | || || |    |||||    || | ||||  | |  |      | | || |   |  ||| | |  |||||| |     | |  ||    
TGATGGCCTTGGAGCTGAGATTGTTGGCACCTTTATTCTTGTTTACACCGTCTTCTCCGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCGgtacccattcatcatctttcttc--tctcttctcatttgtgcaactttaagccaaagtgtgtaaac--aggtttattagctaggtagaagagataaactcacta

upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 2
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagatctaactttgtcaataggtaaagcgattgagttct-----------------------------------------------------------------------------------------------
 ||||| ||||| |||||||| ||||| || || ||||| |||||||| || ||||| || |||||||||||||||| |||||||||||| |||||||| ||| || | |||   |||   |   | |   ||  |     |  |||     ||  |||| |   ||| |  || |     |||    | | |   |  |                                                                                               
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACGGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttcttcttccatccaaagctttggttgattcccctctcatgaagttttgcttttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

upper sequence: Vv15s0046g02420.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 2
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttg--ttttatagatctaactttgtcaataggtaaagcgattgagttct-----------------------------------------------------------------------------------------------
 ||||| ||||| |||||||| ||||| || || ||||| |||||||| || ||||| || |||||||||||||||| |||||||||||| |||||||| ||| || | | |   |||   |   | |   ||  |     |     ||  ||||   |||| |   ||| |  || |     |||    | | |   |  |                                                                                               
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttctccttccatccaaagctttggttgattcccccctctcatgaagttttacttttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351052613|gb|FQ456461.1|FQ456461
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGG
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTT-GGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGG-
EST: gi|71875732|gb|DT024787.1|DT024787
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCT
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCT
EST: gi|110732584|gb|EE107998.1|EE107998
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|33405265|gb|CF210892.1|CF210892
EST:     TTTCTCTGCAACTGATGCCAAGAGGA-TCGATANAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCC
genomic: TTTCTCTGCAACTGATGCCAAGAGAAAT-GCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCC
EST: gi|71868989|gb|DT018044.1|DT018044
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCC
EST: gi|110718142|gb|EE094639.1|EE094639
EST:     TTTCTCTGNCA-CTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTT
genomic: TTTCTCTG-CAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTT
EST: gi|349832881|gb|FQ423003.1|FQ423003
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCGCATGTCCCT                         ATTTTGGCTCCTCTCCCCTTTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110729242|gb|EE105363.1|EE105363
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110725353|gb|EE101754.1|EE101754
EST:     GTTTCTCTGCAACTGATGCCAAGAGAAAAGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCATTGTTCTTGGTTC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTC
EST: gi|110689647|gb|EE066053.1|EE066053
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAAAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGG
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGG
EST: gi|349833027|gb|FQ416405.1|FQ416405
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGGTCATC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATC
EST: gi|34548496|gb|CF516728.1|CF516728
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTGATCTGATCATTGGGTTTGCAGTGGAT-TTGGTTGATCTGGC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGT-TCTTGGTTCATCTGGC
EST: gi|110688607|gb|EE067351.1|EE067351
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGGTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|71876381|gb|DT025436.1|DT025436
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCC
EST: gi|33409808|gb|CF215435.1|CF215435
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTGATCGAGATTGGGTT-GCAGTGTTCTTGGTTCATCTGGC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTC-TCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGC
EST: gi|87584813|gb|DY473830.1|DY473830
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|30303550|gb|CB980344.1|CB980344
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110705808|gb|EE083078.1|EE083078
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110695883|gb|EE074412.1|EE074412
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|351035224|gb|FQ458581.1|FQ458581
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110726334|gb|EE102026.1|EE102026
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCC
EST: gi|110698200|gb|EE075479.1|EE075479
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|33402029|gb|CF207656.1|CF207656
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCC
EST: gi|349816514|gb|FQ399503.1|FQ399503
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|33401613|gb|CF207240.1|CF207240
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCNATTGG
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGG
EST: gi|110707985|gb|EE085010.1|EE085010
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCNATTGG
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGG
EST: gi|110696604|gb|EE072864.1|EE072864
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCCGAT-GGGTTNGCAGTGTTCTTGGGTCATCTGGC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCC-ATTGGGTTTGCAGTGTTCTTGGTTCATCTGGC
EST: gi|110710650|gb|EE086969.1|EE086969
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110719251|gb|EE097012.1|EE097012
EST:     TTTCTCTGCAACTGGATGC-AAGAGAATTGCCAAAAACTCACAGGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGGTTC-TCTGGC
genomic: TTTCTCTGCAACTG-ATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGG-TTCATCTGGC
EST: gi|18458025|gb|BM436303.1|BM436303
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110687136|gb|EE064282.1|EE064282
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110698629|gb|EE076343.1|EE076343
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|30296924|gb|CB973718.1|CB973718
EST:     TTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGGACTCACATGTCCCT                         ATTTTGGCTCCTCT
genomic: TTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAG-ACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCT
EST: gi|351014036|gb|FQ434188.1|FQ434188
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|351018710|gb|FQ425612.1|FQ425612
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|33405253|gb|CF210880.1|CF210880
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCCTCTCC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCC-TCTCC
EST: gi|110688484|gb|EE067092.1|EE067092
EST:     TTTTCTCTGCAACTGATGCCTAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGNAT-GGGTTTGCAGTGTTCTTGGTTCATCTGGC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCC-ATTGGGTTTGCAGTGTTCTTGGTTCATCTGGC
EST: gi|87585869|gb|DY474409.1|DY474409
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110702789|gb|EE079065.1|EE079065
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110357108|gb|EC920423.1|EC920423
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110692133|gb|EE071027.1|EE071027
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGGC
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGG-C
EST: gi|34544388|gb|CF512620.1|CF512620
EST:     CTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGGCTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
EST: gi|110696079|gb|EE074832.1|EE074832
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCA
EST: gi|34546377|gb|CF514609.1|CF514609
EST:     TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCT                         ATTTTGGCTCCTCTCCCGATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA
genomic: TTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattt ... tgaactgcagATTTTGGCTCCTCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCATCTGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGATGGGCTTGGTGCTGAGATAGTTGGCACTTTTGTTCTTGTCTACACTGTTTTCTCTGCAACTGATGCCAAGAGAAATGCCAGAGACTCACATGTCCCTgtaagtattttccctcattgtatcatctctctgtatgtatgcatatgtgtggtttgttttatagatctaactttgtcaataggtaaagcgattgagttct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggtaaa