1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGCTAAGGTGAGATGGCCTGGTTTGTTCGACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATAgtaagctattcttcttcctccctgttcttcaagtcatcgaatactattctttatcgttttttctaaagcctttttatgtgaatgatggctggatgtgata...
species | Vitis vinifera |
transcript | Vv15s0046g02330.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATA ATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTGEST: gi|349812531|gb|FQ407150.1|FQ407150
genomic: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATAgtaagctatt ... aaaatggcagATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTG
EST: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATA ATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTGEST: gi|71856100|gb|DT005155.1|DT005155
genomic: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATAgtaagctatt ... aaaatggcagATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTG
EST: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATA ATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTGEST: gi|110425155|gb|EC991534.1|EC991534
genomic: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATAgtaagctatt ... aaaatggcagATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTG
EST: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATA ATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTGEST: gi|26257481|gb|CA808544.1|CA808544
genomic: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATAgtaagctatt ... aaaatggcagATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTG
EST: ACGGCGTGGATTCGAAGTTGGAGGA-TGGATTGTTGATCAGATGTTC-TA ATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACCGCTTGTGAGGTTG
genomic: ACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATAgtaagctatt ... aaaatggcagATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTAAGGTGAGATGGCCTGGTTTGTTCGACGGTGTGGATTCGAAGTTGGAGGATTGGATTGTTGATCAGATGTTCATAgtaagctattcttcttcctccctgttcttcaagtcatcgaatactattctttatcgttttttctaaagcctttttatgtgaatgatggctggatgtgata
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctccc