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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCAAAATCAGCACAAGGCCCTTTATTTCCAGAAGTAGATGCCCTTTTATCTTTGTTCAAGGATTCTTGTAGGGAGTTGGTTGATCTTCAACAGCAGgttcatcttctgaccgtaggtggtgacctggaacaagtcatcttttgtttattttctgagccttttttttttgttacttttgattgaag

Basic information

species Vitis vinifera
transcript Vv15s0046g02200.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859766|gb|DT008821.1|DT008821
EST:     TATCTTTGTTCAAGGATTCTTGTAGGGAGTTGGTTGATCTTCAACAGCAG                         ATTGATGGAAGACTCTACAATCTCAAAAAGGAGGTTTCGATCCAAGACTCT
genomic: TATCTTTGTTCAAGGATTCTTGTAGGGAGTTGGTTGATCTTCAACAGCAGgttcatcttc ... ttgattgaagATTGATGGAAGACTCTACAATCTCAAAAAGGAGGTTTCGATCCAAGACTCT
EST: gi|71858219|gb|DT007274.1|DT007274
EST:     TATCTTTGTTCAAGGATTCTTGTAGGGAGTTGGTTGATCTTCAACAGCAG                         ATTGATGGAAGACTCTACAATCTCAAAAAGGAGGTTTCGATCCAAGACTCT
genomic: TATCTTTGTTCAAGGATTCTTGTAGGGAGTTGGTTGATCTTCAACAGCAGgttcatcttc ... ttgattgaagATTGATGGAAGACTCTACAATCTCAAAAAGGAGGTTTCGATCCAAGACTCT
EST: gi|71857518|gb|DT006573.1|DT006573
EST:     TATCTTTGTTCAAGGATTCTTGTAGGGAGTTGGTTGATCTTCAACAGCAG                         ATTGATGGAAGACTCTACAATCTCAAAAAGGAGGTTTCGATCCAAGACTCT
genomic: TATCTTTGTTCAAGGATTCTTGTAGGGAGTTGGTTGATCTTCAACAGCAGgttcatcttc ... ttgattgaagATTGATGGAAGACTCTACAATCTCAAAAAGGAGGTTTCGATCCAAGACTCT