Sequence
atgc intronic sequence ATGC exonic sequenceAAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttctgctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatttgttttttttttgtctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g03410.1 (Oryza sativa), 5'ss of exon 2
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttctgctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatttgttttttttttgtctag
| ||||||||||| ||||| |||||||||||||| || || || || ||||| |||||||| ||||| ||||| || ||||||| ||||| ||||| ||||| | ||||| || | || | || | | || | || | |||| || |||| |||| ||| ||
AGGCTGAGAAGGAGTTCAAGGTGGAGGTTGAAGCGATCGGGCGTGTTCGGCATAAGAATCTCGTTAGATTGCTCGGCTACTGTGTAGAGGGCGCTTATAGgtacaatgaaatctcttc-atcaattttgtgcattattattccctc----tctgattaatggatgtttta----ctcacattgccgttttggttgaacag
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G317938_T01 (Zea mays), 5'ss of exon 2
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtat---tgctacc----------catcttctgctaaatcc---tgacactgggtt--ttct-------tgaggatccaaaaaactaacattt--tttcatctttcatttgttttttttttgtctag----
| || |||||||| ||||| |||||||| ||||| || || || || |||||||| ||||| || |||||||| || ||||| | ||||| |||||||||||| || | | || ||| || | | ||||| ||| |||| | || || || | | || || | | ||| | | | | | || |
AGGCCGAGAAGGAGTTCAAGGTGGAGGTGGAAGCAATCGGTCGTGTTCGGCACAAAAATCTCGTCAGGTTGCTCGGCTACTGCGTAGAGGGTGCTTACAGgtatgtgtgttggcaggcacattgcaatctcttcttcgttcggtggacacctagttgcttctctcaatttagggttctcaatgatggaagcttgcttctgtatatcactactatggtctatgcttgaacag
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 2
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtat----------tgctacccatcttctgctaaatcc--tgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatt-tgttttttttttgtctag
| || |||||||| ||||| |||||||| ||||| || || || || |||||||| ||||| || |||||||| || ||||| | || || |||||||||||| ||||| | | | | ||| |||||| | | | |||| | || | | | | || ||| | | | | | ||| ||
AGGCCGAGAAGGAGTTCAAGGTGGAGGTCGAAGCAATTGGTCGTGTTCGGCACAAAAATCTCGTCAGGTTGCTTGGTTACTGCGTAGAAGGTGCTTACAGgtatgatggcatattgctatctcttcttcattcggtccggtgacacctactctcagtttggattctcaataatggaagcctgattcctgtcactgtcgtctatgcttgaacag
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 3
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttctgctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttc-atttgttttttttttgtctag---
||||||||| ||||| ||||| ||||| ||||| || || || || |||||||||||||||||||||||||| |||||||||| |||||| || ||||||||| | | || || | | | | | ||| || || | || || ||| |||| | | || | || | || | | |
AAGCTGAGAGAGAATTTAAAGTTGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCATACAGgtatatttttttttgttttgaacattgaagctaaaagagtttgttt-ggtttaaagaatgtaagatttgaactttgaaggatgtattcaatattcatattgcag
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 2
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttctg---ctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatttgttttttttttgtc-tag
|||||||||| ||||| ||||| ||||| ||||| || || || || || ||||| ||||||||||||||||| |||||||||| |||||||| ||||||||||| | | | ||||| | | | | | | | | ||| | | | ||| | ||| | || || ||
AAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTCGAGGGAGCCTACAGgtattgatttcttctcttaaaaactaaaaagaaaaaaattgatgctatcaattttgttcggtttgacaagatgtaagatttgaagtgtggcactgttttcacag
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 2
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttct-----gctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatttgttttttttttgtctag-------
||||||||| ||||| ||||| ||||| ||||| || || || || |||||||||||||||||||||||||| |||||||||| |||||| | |||||||||| | | || | | || ||| || | | | ||| || | ||| | |||| | | | | || ||| |
AAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGAATACAGgtattttttttttttttttttcattttgaacattgaagctataaagtttgtttagtttaaagaat--gtaagatttgaactttgaagtatgtattcaatgttcatattgcag
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 2
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttctgctaaatcctgac--actgggttttcttgaggatccaaa--------aaactaacattttttcatctttcatttgttttttttttgtc-tag
|||||||||| ||||| ||| | ||||| ||||| || || || || || ||||| |||||||||||| |||| |||||||||| ||||||||| ||||||||||| || | |||||| |||| || | |||| | | || | |||| | | | | | | ||| | | || || ||
AAGCTGAGAAAGAATTTAAAATAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGCTGCTTGGATACTGTGTTGAGGGAGCCTACAGgtattgatatct-tcttctcttaaaaactaaatagaaaaaaaaaattgatgctatcaattttgtttggtttgacatgatgtgagatctgaagtgtggtactgttttcacag
upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G01540.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttctgctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatttgttttttttttgtctag
|||| ||||||||||||||||| || || |||| ||| || || || || |||||||||||||||||| | | || || || | || || || ||||||||| |||| || || || || | | | | ||| ||| | |||| | | | ||
AAGCAGAGAAGGAATTCAAAGTAGAAGTGGAAGTCATTGGGCGAGTACGACACAAGAATCTTGTTAGGCTTTTAGGGTATTGCGTGGAAGGTGCATACAGgtatatataccg--ctgctcgtatctcttttc-cggtgttacaaaagcgatgtcgtgacctaatgctgggttcgttactatag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715232|gb|FC068017.1|FC068017EST: CACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAG GATGCTTGTGTATGAGTATGTGGACAATGGTAATTTGGACCAGTGGCT
genomic: CACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctac ... ttttgtctagGATGCTTGTGTATGAGTATGTGGACAATGGTAATTTGGACCAGTGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGgtattgctacccatcttctgctaaatcctgacactgggttttcttgaggatccaaaaaactaacattttttcatctttcatttgttttttttttgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT