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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCAGAGACCTGTAAAGACACGTGCAAGGGCATCCATTGCCACCTTCAAGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgtctctcacccatgcgatgcttcttattttcatattcattttctgtttgtgtccatgattgtttccaacttagaatttaatgacttaatttt...

Basic information

species Vitis vinifera
transcript Vv15s0046g01780.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g01780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G39130.1 (Glycine max), 5'ss of exon 3
AGGGCAGAGACCTGTAAAGACACGTGCAAGGGCATCCATTGCCACCTTCAAGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgtc-tctcacccatgcgatgcttcttattttcatattcattttctgtttgtgtccatg-attgtttccaacttagaatttaatgacttaatttt--
||||||||||||| | ||||| || || ||||| ||  |||||||||| ||| ||||||||||||| ||  |||||||| |||| ||||| ||||||||||| || | ||  |   |  ||    ||  |  ||| |   ||||   |  |  |  ||||   ||  | ||  |  |  ||||||      || |  ||  |  
AGGGCAGAGACCTATTAAGACTCGGGCCAGGGCTTCTCTTGCCACCTTTAAGATCAGGGAAGGTCAACCACTTGGGATTTCTGTGACACTAAGAGGAAATgtgagcatgttgtagtattcaatttatattgtttaatga-atatagttgattgggatgtgatgatttactgaattta-tttagaacaatgcgagt--atcatga

upper sequence: Vv15s0046g01780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G47200.1 (Glycine max), 5'ss of exon 2
AGGGCAGAGACCTGTAAAGACACGTGCAAGGGCATCCATTGCCACCTTCAAGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgtctctcacccatgcgatgcttcttatttt-catattcattttctgtttgtgtccatgattgtttccaacttagaatttaatgacttaatttt--------
||||||||||||| | ||||| || || ||||| ||  ||||||| || ||| ||||||||||||| ||  ||||||||||||| ||||| ||||||||||| ||  | | |   |   || ||||   | || |||     ||  | ||  ||    ||   |||||| |    || |||    || |||  ||   |||        
AGGGCAGAGACCTATTAAGACTCGGGCCAGGGCTTCTCTTGCCACTTTTAAGATCAGGGAAGGTCAACCGCTTGGGATTGCTGTGACACTAAGAGGAAATgtgag--catttagtagt-attcgatttatattgtttagtgaatatagttgatgggcatggg-atgatt-tactgaattta----tttatgctttttcttttatgctct

upper sequence: Vv15s0046g01780.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G01310.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGGCAGAGACCTGTAAAGACACGTGCAAGGGCATCCATTGCCACCTTCAAGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgtctctcacccatgcgatgcttcttattttcatattcattttctgtttgtgtccatgattgtttccaacttagaatttaatgacttaatttt
|||||||| |||| | |||||||| || || || |||||||| || |||||| ||||||||| ||| ||| |||||||||||||||| || |||||| |||| ||     || |    |    ||    ||  | |||| | || | ||    ||| |||   | |   |||   | || || | |  ||||        
AGGGCAGAAACCTATTAAGACACGAGCTAGAGCTTCCATTGCTACTTTCAAGATCAGGGAAGATCAACCTCTTGGGATTGCTGTCACTCTCAGAGGAGATgtgag-----ctatatttctcttgactaatcaaactttccttttgagtt---atttatgtat-taacattttgtgattttgactgttgtgacag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035455|gb|FQ463300.1|FQ463300
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|22013151|gb|BQ798200.1|BQ798200
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351045317|gb|FQ451765.1|FQ451765
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351030578|gb|FQ437004.1|FQ437004
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351030538|gb|FQ436964.1|FQ436964
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351042130|gb|FQ456340.1|FQ456340
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAGAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349828263|gb|FQ416216.1|FQ416216
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351017882|gb|FQ436235.1|FQ436235
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|161720953|gb|FC070681.1|FC070681
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|32459733|gb|CD800907.1|CD800907
EST:     GGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCACATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAA
genomic: GGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACT--CATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAA
EST: gi|71865643|gb|DT014698.1|DT014698
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351016072|gb|FQ432027.1|FQ432027
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351026964|gb|FQ436617.1|FQ436617
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|110394841|gb|EC960197.1|EC960197
EST:     GGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: GGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351022203|gb|FQ438788.1|FQ438788
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|71867291|gb|DT016346.1|DT016346
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|110687486|gb|EE064950.1|EE064950
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|110375776|gb|EC940793.1|EC940793
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351033620|gb|FQ447779.1|FQ447779
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349832551|gb|FQ421909.1|FQ421909
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349815975|gb|FQ403616.1|FQ403616
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351030698|gb|FQ438536.1|FQ438536
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349825710|gb|FQ421809.1|FQ421809
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351033384|gb|FQ446616.1|FQ446616
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351045028|gb|FQ449282.1|FQ449282
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCCCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351049074|gb|FQ431618.1|FQ431618
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351023686|gb|FQ448237.1|FQ448237
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATTGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351030286|gb|FQ432224.1|FQ432224
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|71867016|gb|DT016071.1|DT016071
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|71868053|gb|DT017108.1|DT017108
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|352790706|gb|FQ478254.1|FQ478254
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351042360|gb|FQ442827.1|FQ442827
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|27578568|gb|CB001263.1|CB001263
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|71869282|gb|DT018337.1|DT018337
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAA
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAA
EST: gi|351012870|gb|FQ430433.1|FQ430433
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|352791450|gb|FQ481029.1|FQ481029
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|110358358|gb|EC922512.1|EC922512
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|71873611|gb|DT022666.1|DT022666
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGNGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351021558|gb|FQ429662.1|FQ429662
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351045145|gb|FQ451593.1|FQ451593
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349821808|gb|FQ408246.1|FQ408246
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351053655|gb|FQ440164.1|FQ440164
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349812605|gb|FQ407224.1|FQ407224
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|77579195|gb|DV218426.1|DV218426
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|110389487|gb|EC954329.1|EC954329
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349828781|gb|FQ419114.1|FQ419114
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351056181|gb|FQ453643.1|FQ453643
EST:     AGCTCATGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGAGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|30328706|gb|CD011968.1|CD011968
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|110702811|gb|EE079108.1|EE079108
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|33406268|gb|CF211895.1|CF211895
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349807946|gb|FQ402337.1|FQ402337
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|29782281|gb|CB347466.2|CB347466
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351053768|gb|FQ441534.1|FQ441534
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|110396342|gb|EC962026.1|EC962026
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|33406184|gb|CF211811.1|CF211811
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|77587759|gb|DV223071.1|DV223071
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351047630|gb|FQ455027.1|FQ455027
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|352786576|gb|FQ479783.1|FQ479783
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349821668|gb|FQ411168.1|FQ411168
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGCCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|349821014|gb|FQ404267.1|FQ404267
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCGACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351013187|gb|FQ424892.1|FQ424892
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
EST: gi|351047074|gb|FQ454684.1|FQ454684
EST:     AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAAT                         ATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT
genomic: AGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgt ... attacaacagATGATGTACTCATTTCTGGATCGGCTCATCAACTTGGGGCTTCCCAGAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGCAGAGACCTGTAAAGACACGTGCAAGGGCATCCATTGCCACCTTCAAGCTCAGGGAAGGTCAGCCTGTTGGGATTGCTGTCACACTTAGAGGAAATgtaaggacgtctctcacccatgcgatgcttcttattttcatattcattttctgtttgtgtccatgattgtttccaacttagaatttaatgacttaatttt

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc