1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGAGGTCCGAGTGGTCATTTACAGCCCAACAATTCTGGGTTTCACACAACTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAGgtttgatatatctaattttgttttcttaatggcaaaggaactttgatttggtttctgcagttggctctaaaagttaggttcatctgttctgttaggcttgagatattaaaattatgatctctttctctatttgctattttccag
species | Vitis vinifera |
transcript | Vv15s0046g00950.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAG GTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTTEST: gi|30133919|gb|CB919258.1|CB919258
genomic: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAGgtttgatata ... tattttccagGTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTT
EST: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAG GTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTTEST: gi|110708620|gb|EE086373.1|EE086373
genomic: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAGgtttgatata ... tattttccagGTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTT
EST: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAG GTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTTEST: gi|34548484|gb|CF516716.1|CF516716
genomic: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAGgtttgatata ... tattttccagGTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTT
EST: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAG GTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTTEST: gi|161717747|gb|FC068155.1|FC068155
genomic: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAGgtttgatata ... tattttccagGTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTT
EST: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAG GTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTT
genomic: CTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAGgtttgatata ... tattttccagGTTGAGCAACCTTTATGCCTTGAATGCATGAGGGTGCTGTCTGATAAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGGTCCGAGTGGTCATTTACAGCCCAACAATTCTGGGTTTCACACAACTATAACTGTTCTGAAGCGTGCCTTTGATATTGCCACAACCCAGATACAGgtttgatatatctaattttgttttcttaatggcaaaggaactttgatttggtttctgcagttggctctaaaagttaggttcatctgttctgttaggcttgagatattaaaattatgatctctttctctatttgctattttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC