1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTCAGGTGCTGGGAGTATCGCCAACACCCTTCAATTGTTCGTGTTACGAGGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattgagctggtctatacattgattctaaccatgatgtattctgtttaagcattgttgcctttgatcatgtaagaactccattttacatagaaca...
species | Vitis vinifera |
transcript | Vv15s0021g02480.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|349828916|gb|FQ419249.1|FQ419249
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110687547|gb|EE065083.1|EE065083
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|29783719|gb|CB350095.2|CB350095
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|37188816|gb|CF608165.1|CF608165
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110690582|gb|EE067807.1|EE067807
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|30297287|gb|CB974081.1|CB974081
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110360131|gb|EC922799.1|EC922799
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|351038884|gb|FQ457559.1|FQ457559
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110731428|gb|EE105841.1|EE105841
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110703945|gb|EE081326.1|EE081326
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110384901|gb|EC949369.1|EC949369
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|26265189|gb|CA816252.1|CA816252
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110374851|gb|EC939789.1|EC939789
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110722129|gb|EE098087.1|EE098087
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GCCCACACCGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110724837|gb|EE101012.1|EE101012
genomic: GCCCACA-CGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110732519|gb|EE107877.1|EE107877
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|37188968|gb|CF608317.1|CF608317
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110687793|gb|EE065609.1|EE065609
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110710410|gb|EE086731.1|EE086731
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|30305479|gb|CB982273.1|CB982273
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|110688678|gb|EE067502.1|EE067502
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|71875160|gb|DT024215.1|DT024215
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|22008858|gb|BQ793892.1|BQ793892
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: TATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTEST: gi|352785725|gb|FQ475728.1|FQ475728
genomic: TATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAG GGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattg ... tctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCAGGTGCTGGGAGTATCGCCAACACCCTTCAATTGTTCGTGTTACGAGGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGgtaagaattgagctggtctatacattgattctaaccatgatgtattctgtttaagcattgttgcctttgatcatgtaagaactccattttacatagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatagaa