Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGGAGTTTCAAAAAATGCCAATCAAGATGAACTGAAGAAGGCATATAAAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAGgtaaatccttataaacctagaccaccaaagccaccataaccaccacaattacagttacaaattctttttaaagatctcctatgtgaatgaactacccgag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g43930.3 (Oryza sativa), 5'ss of exon 2
TCTTGGAGTTTCAAAAAATGCCAATCAAGATGAACTGAAGAAGGCATATAAAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAGgt--aaatccttataaacctagacc-accaaagccaccataaccaccacaattacagttacaaattctttttaaagatctcctatgtgaatgaactacccgag
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GCTTGGTGTATCTAAGACAGCAACCCAGGATGAGCTGAAGAAAGCGTACCGTAAAGCTGCCATTAAAAACCACCCTGATAAGGGTGGAGACCCTGAGAAGgtctggggacaaacagttctatatttgtctactcttgaactgttggtttggtttggttgacgttttactttttatggcttggtcag-----------------
upper sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G118731_T01 (Zea mays), 5'ss of exon 2
TCTTGGAGTTTCAAAAAATGCCAATCAAGATGAACTGAAGAAGGCATATAAAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAGgtaaatccttataaacctagaccaccaaagccaccataaccaccacaattacagttacaaattctttttaaagatctcctatgtgaatgaactacccgag
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TCTTGGTGTGTCTAAGACCGCAAGTCAGGATGAGCTTAAGAAAGCATACAGAAAAGCTGCCATAAAAAACCATCCTGATAAGGGTGGAGACCCTGAGAAGgtttgttctgtccacatttgttctgtaatattagcttagtatgtgcaattgtaggtgt---tctcatcgccaggttttccttgatgatgaacttggcag-
upper sequence: Vv15s0021g02090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S100_36V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTTGGAGTTTCAAAAAATGCCAATCAAGATGAACTGAAGAAGGCATATAAAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAGgtaaatccttataaacctagaccaccaaagccaccataaccaccacaattacagttacaaattctttttaaagatctcctatgtg-aatgaactacccgag-
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GCTCGGGGTGTCGAAGAGCGCGTCGCAGGATGAGCTGAAGAAGGCGTACAGGAAGGCGGCAATTAAGAATCATCCTGATAAGGGTGGAGACCCGGAGAAGgtacgatagtgttttagttggggatc--ggtctctgtgtctagttccttggccgtggaaaggtctgcccgtcctcaggacatatccgatggacctacagagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71858916|gb|DT007971.1|DT007971EST: AAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAG TTCAAGGAGTTGTCTCAAGCTTATGATGTTCTTAGCGATCCAGATAAAAGA
genomic: AAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAGgtaaatcctt ... tttgtatcagTTCAAGGAGTTGTCTCAAGCTTATGATGTTCTTAGCGATCCAGATAAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGGAGTTTCAAAAAATGCCAATCAAGATGAACTGAAGAAGGCATATAAAAAGGCTGCCATAAAGAACCACCCAGACAAGGGTGGAGACCCGGAGAAGgtaaatccttataaacctagaccaccaaagccaccataaccaccacaattacagttacaaattctttttaaagatctcctatgtgaatgaactacccgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgaa