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CGTGCCGGAAACTGGGTGTCTCTCTATTATTGTGCTTGGTGCTTCCGGTGATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacgggcttgcttgctgtgtcttgtatataaatttgatgttcttgtgtgatttggttatgatcattagggttaatataaaaactaaaatcaatcca...
species | Vitis vinifera |
transcript | Vv14s0171g00490.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGEST: gi|110686452|gb|EE064108.1|EE064108
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGEST: gi|161717585|gb|FC065623.1|FC065623
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGEST: gi|294965944|gb|GW839283.1|GW839283
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGEST: gi|37190597|gb|CF609946.1|CF609946
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACATATTTTTGGTTATGCAAGGACCAAGEST: gi|110364929|gb|EC928538.1|EC928538
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGEST: gi|30128024|gb|CB913363.1|CB913363
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGEST: gi|161719304|gb|FC068268.1|FC068268
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAGEST: gi|110372969|gb|EC937167.1|EC937167
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
EST: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAG GGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
genomic: ATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacggg ... atgcgtacagGGATTCTTACACTCAAATGAGGTACACATTTTTGGTTATGCAAGGACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGCCGGAAACTGGGTGTCTCTCTATTATTGTGCTTGGTGCTTCCGGTGATCTTGCCAAGAAGAAGACTTTTCCAGCTCTCTTCAACCTTTACCGCCAGgtttgacgggcttgcttgctgtgtcttgtatataaatttgatgttcttgtgtgatttggttatgatcattagggttaatataaaaactaaaatcaatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatca