1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgttggatagaagtttaatatgataaaatggttattatagtttttagaaacccaataatataatgctggtctctactcccttttgggataagaaatgccag...
species | Vitis vinifera |
transcript | Vv14s0171g00250.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGATEST: gi|77585738|gb|DV221960.1|DV221960
genomic: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgttggataga ... tttcctatagGTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGAT
EST: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGATEST: gi|71870914|gb|DT019969.1|DT019969
genomic: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgttggataga ... tttcctatagGTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGAT
EST: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGATEST: gi|110382064|gb|EC938387.1|EC938387
genomic: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgttggataga ... tttcctatagGTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGAT
EST: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGATEST: gi|26257383|gb|CA808446.1|CA808446
genomic: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgttggataga ... tttcctatagGTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGAT
EST: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGATEST: gi|349826908|gb|FQ418999.1|FQ418999
genomic: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgttggataga ... tttcctatagGTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGAT
EST: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG GTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGAT
genomic: GAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgttggataga ... tttcctatagGTTCTTGGGAGGTTAGCATCTCAAATTTCTACTGTGATTCAAGGCAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAGgttggatagaagtttaatatgataaaatggttattatagtttttagaaacccaataatataatgctggtctctactcccttttgggataagaaatgccag
- - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa