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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTCAGGAGGTACAGCTTCAGGAAAGACTACTGTCTGTGACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAGgtatgctggagctcatttcactaaaatgtagttcgggtacaatggcatttcttattggttgtgactgaaattagctgaggttaactttcatgcaatagaa...

Basic information

species Vitis vinifera
transcript Vv14s0171g00090.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964845|gb|GW838648.1|GW838648
EST:     ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAG                         GATTCTTTTTACCGTGGCTTGACTGCTGACGAATCAGAACGTGTACATGAG
genomic: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAGgtatgctgga ... tattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG
EST: gi|83274960|gb|DV939056.1|DV939056
EST:     ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAG                         GATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG
genomic: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAGgtatgctgga ... tattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG
EST: gi|46917774|gb|CN547103.1|CN547103
EST:     ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAG                         GATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG
genomic: ACATGATCATTCAACAACTCCATGATCACCGAGTTGTGCTTGTCAACCAGgtatgctgga ... tattctgtagGATTCTTTTTACCGTGGCTTGACTGCTGAAGAATCAGAACGTGTACATGAG