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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTAGATATTGAACTTTGGAATTCCACACAAGAGTGCTTTGAAGTTCTGAAATCACGTGGTTATCGCATTGCTACAACACATGTTGGAATGGATGCGgtatcaatcaacttctttccttaatgtagataatatttaaagtgatgtgcttagtttatgatatatgatctatccattttgtgatgggaattaacagttcatagcttctctaatcacaataatattcttaactgatcctgggtgtccttggtgctatgcatag

Basic information

species Vitis vinifera
transcript Vv14s0108g01380.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G49880.1 (Glycine max), 5'ss of exon 2
ATGGTTAGATATTGAACTTTGGAATTCCACACAAGAGTGCTTTGAAGTTCTGAAATCACGTGGTTATCGCATTGCTACAACACATGTTGGAATGGATGCGgtatcaatcaacttctttccttaat-gtagataatatttaaagtgatgtgcttagtttatgatatatgatctatccattttgtgatgggaattaacagttcatagcttctctaatcacaataatattcttaactgatcctgggtgtccttggtgctatgcatag
|||||| || |||||||| ||| | || ||| | ||||||||| || |  |||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||   |   ||   ||  ||  | || |   || |||    || | || |     |||| |  ||     | | || |   |||     | | |  |   |                                                             
ATGGTTGGACATTGAACTGTGGGACTCTACAAAGGAGTGCTTTAAAATGTTGAAATCACGCGGTTATCGAATTGCCACAACTCATGTGGGAATGGATGCGgtatggtttgtctctgttattttttagttgcctatgttt----tgctttgttgcaaatatg-tgcataggggaccaatgtctggataaaggtgagcgttgtgtta-----------------------------------------------------------

upper sequence: Vv14s0108g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 2
ATGGTTAGATATTGAACTTTGGAATTCCACACAAGAGTGCTTTGAAGTTCTGAAATCACGTGGTTATCGCATTGCTACAACACATGTTGGAATGGATGCGgtatcaatcaacttctttccttaatgtagataatatttaaagtgatgtgcttagtttatgatatatgatctatccattttgtgatgggaattaacagttcatagcttctctaatcacaataatattcttaactgatcctgggtgtccttggtgctatgcatag
|||||| || |||||||| ||| | || ||| | ||||||||| || |  |||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||   |    |    |  ||  | |    |    ||  |||| | || |     |||| || ||     | | || |   |||     | |    |   |                                                             
ATGGTTGGACATTGAACTGTGGGACTCTACAAAGGAGTGCTTTAAAATGTTGAAATCACGCGGTTATCGAATTGCGACAACTCATGTGGGAATGGATGCGgtatggtttgtttctgctattttttattccca----ttgcagtgctttgttacaaatatg-tacataggggaccaatgtctggataaaggtgagggttgtgttag----------------------------------------------------------