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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGCCGAGACATATGATCCCGATGCTTTGTCAATGGATGGGTTCCATGGCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgttacatttaaacccatcaaagaagaatgattgaaagaaaagaaggaagatgagagggaaagaagggaagaggaatgatgttattgctggttttctgatccacttttaattaacatag

Basic information

species Vitis vinifera
transcript Vv14s0108g01330.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g01330.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 5'ss of exon 2
CAATGCCGAGACATATGATCCCGATGCTTTGTCAATGGATGGGTTCCATGGCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgttacatttaaacccatcaaagaagaatgattgaaagaaaagaaggaagatgagagggaaagaagggaagaggaatgatgttattgctggttttctgatccacttttaattaacatag
|||||| || | |||||||    |||||||     ||||||| ||  ||||||||||||||||||||||||| || ||||||||||| || |||   ||||||    |   ||  | | | |||   | |||  || |                ||   |  ||| |  | ||    |||| || |  | ||||   |||  |  |                
CAATGCTGATATATATGATAAAAATGCTTTCCATGTGGATGGATTTGATGGCTCTTTGGTTGAATTCATGGTTAGAGAAACCGAAAAACTACATCAACAGgtagagcagggttgtaactagcaat--ataattgttcat---------------tgtatgccaaaaattgcaa----aatgttgatggttctggccatcttgtgtag---------------

upper sequence: Vv14s0108g01330.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G028369_T01 (Zea mays), 5'ss of exon 2
CAATGCCGAGACATATGATCCCGATGCTTTGTCAATGGATGGGTTCCATGGCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgttacatttaaacccatcaaagaagaatgattgaaagaaaagaaggaagatgagagggaaagaagggaagaggaatgatgttattgctggttttctgatccacttttaattaacatag
|||||| || |||||||||  | |||||||    |||||||| ||    ||||||||||||||||  ||||| || ||||| |||||||| ||||| |||||    | |||||  ||   |             || | |  ||| |  |  ||| |  |      || | |  |   | | | || ||  |    |                         
CAATGCTGATACATATGATAGCAATGCTTTCCACATGGATGGTTTTGGCGGCTCTTTGGTTGAATATATGGTTAGAGAAACTGAAAAGCTCCATGCACAGgtggaattcatttggacatttt------------ttaagaacaaaaacagttgatcatggcatgcaaaagaataacatacgctattgtttttaacatag-----------------------

upper sequence: Vv14s0108g01330.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G03290.1 (Glycine max), 5'ss of exon 2
CAATGCCGAGACATATGATCCCGATGCTTTGTCAATGGATGGGTTCCATGGCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgt---tacatttaaacc-catcaaagaagaatgattgaaag--------aaaagaaggaagatgagagggaaagaagggaagaggaatga-tgttattgctggttttctgatccacttttaattaacatag
|||||  || |||||||| || ||||| || || |||||||| || | |||||| |||||||| | ||||||||||||||| || | |||||||||  |||| |||   |  |  |||  | ||  |   |    ||| | ||||        |||| || ||  | |  | || |  || |   ||   || | ||||| |  || |     |||   | ||  | | |     
CAATGAAGATACATATGACCCTGATGCCTTCTCCATGGATGGATTTCGTGGCTCGTTGGTTGAGTACATGGTCAGGGAAACTGAGAGGCTTCATGCCAAGgtgtgtgtgtggacctaactctcaaaagcaattcttgactaaaagttttctataaaaaaatgataaagtaaaggcacaaatgcttgatatataaatgttacttttgctgactggatttccattccactgaag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714107|gb|FC063819.1|FC063819
EST:     GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAG                         GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
genomic: GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgttaca ... attaacatagGTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
EST: gi|351041739|gb|FQ455949.1|FQ455949
EST:     GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAG                         GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
genomic: GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgttaca ... attaacatagGTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
EST: gi|161715858|gb|FC065189.1|FC065189
EST:     GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAG                         GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
genomic: GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgttaca ... attaacatagGTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
EST: gi|351026402|gb|FQ428414.1|FQ428414
EST:     GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAG                         GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
genomic: GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgttaca ... attaacatagGTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
EST: gi|351040113|gb|FQ425199.1|FQ425199
EST:     GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAG                         GTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG
genomic: GCTCTTTGGTTGAATTCATGGTCAGGGAAACCGAAAAGCTTCATGCTCAGgtatgttaca ... attaacatagGTGGGCAGGTACAAGAGCCCTGATGAGCATCCTTTCTTCCCAGTTGAGTTG