Sequence
atgc intronic sequence ATGC exonic sequenceAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTTCAAGgtatgcgttctactgaaacgaaatccattgctacatctcattattcatttagaaatgaaaagaatgtgtctctgaacttttgatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G37020.3 (Glycine max), 5'ss of exon 2
AAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTTCAAGgta---tgcgttctactgaaacgaaatccattgctacatctcattattcatttagaaatgaaaagaat--gtgtctctgaacttttgatag--------
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AAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGTTAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgtactgttctttggactgttattaaagcttttatt-cgcctaatgcgacaaaggtaaatgccagttattggtgtggctaaatttctcatcatttggcag
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G49660.1 (Glycine max), 5'ss of exon 2
AAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTTCAAGgtatgcgttctactgaaacgaaatccattgctacatctcattattcatttagaaatgaaaagaat--gtgtctctgaacttttg-atag--------
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AAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGCTGAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGgt---tggattgttaaaa--gatttattcgcctcatgacataatgagtggataaatgtcagttattggtgtggctaaatttttccatcatttggcag
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G01120.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTTCAAGgtatgcgttctactgaaacgaaatccattgctacatctcattattcatttagaaatgaaaagaatgtgtctctgaactt-ttgatag-------------------------------
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AAGATTAGGCCGTGGTATAGTGACGGATGCTATCACTACTCCTGTAGTCAACACATCTGCCTACTTCTTCAAGAAAACTGCTGAGCTTATTGACTTCAAGgtccgttgattgattcagtctctttcttttatggattagaataacacctattaggttgaaagaatctcttactagttttattgactttgtttatcttcaaaaaattgaattattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714535|gb|FC062985.1|FC062985EST: ATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTTCAAG GAGAAACGCCGGGCAAGTTTTGAATATGGGCGTTATGGAAATCCAACAACG
genomic: ATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTTCAAGgtatgcgttc ... cttttgatagGAGAAACGCCGGGCAAGTTTTGAATATGGGCGTTATGGAAATCCAACAACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTTCAAGgtatgcgttctactgaaacgaaatccattgctacatctcattattcatttagaaatgaaaagaatgtgtctctgaacttttgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA