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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATCTTGTGGAGCACATTGTACTGCTGCAATTGCAGAACCTCGTGAAAAGAATGGAATCGTCTCAACAAGTAGACTCTGGGTCTGGGGGCAGAATCAAgtagtatttgtgacctctatatccttactatatccttatcatttccttttaacctctgatacatcttttttactctctctctctctaaacatattaatatgtttttttcctgtatttacag

Basic information

species Vitis vinifera
transcript Vv14s0083g01020.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0083g01020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g40260.1 (Oryza sativa), 5'ss of exon 3
CATATCTTGTGGAGCACATTGTACTGCTGCAATTGCAGAACCTCGTGAAAAGAATGGAATCGTCTCAACAAGTAGACTCTGGGTCTGGGGGCAGAATCAAgtagtatttgtgacctctatatccttactat---atccttatcatttccttttaacctctgatacatcttttttactctctctctctctaaacatattaatatgtttttttcctgtatttacag
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AGTGTCCTGTGGAGCACATTGTACAGCTGCTGTTGCTGAACCTCGAGAAAACAATGGCACTATATCAAGAAGTAGGCTCTGGGTCTGGGGACAAAATCAGgtt-------tgcccctcatatgattactgtccaatatgtgtgatcagcaattta--tttaataaaa-tattcagcacttgcggtatccatgcag-----------------------------