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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAGATTTAGACAGTCTCTGTGATGCTTTCAGAGGTTGCCATGCTGTTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttacttaactattccattacacaactatttaatattgatacccatttggaaatcagcagaaaattgacagtctcagttttgatttccattctag...

Basic information

species Vitis vinifera
transcript Vv14s0083g00320.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720585|gb|EE096646.1|EE096646
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|110718836|gb|EE096125.1|EE096125
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|27580474|gb|CB003169.1|CB003169
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|110711942|gb|EE088999.1|EE088999
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|110711381|gb|EE087792.1|EE087792
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|110710841|gb|EE087354.1|EE087354
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|110730041|gb|EE106669.1|EE106669
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|110729823|gb|EE106203.1|EE106203
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|71863035|gb|DT012090.1|DT012090
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|37184998|gb|CF604351.1|CF604351
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGC
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTT-CTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGC
EST: gi|110371210|gb|EC935047.1|EC935047
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|161717840|gb|FC066608.1|FC066608
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|294963758|gb|GW836608.1|GW836608
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
EST: gi|161718910|gb|FC068628.1|FC068628
EST:     TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCG                         GAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT
genomic: TTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttac ... tttttttcagGAGTGGATGGCGTTTCTTGAGACAGAAGCAGCAAGGAATGTGATCGAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGGGAGATTTAGACAGTCTCTGTGATGCTTTCAGAGGTTGCCATGCTGTTTTCCATACCTCCTCCTTCATTGATATACATGGGGTCTCTGGTTATTCGgttagtttacttaactattccattacacaactatttaatattgatacccatttggaaatcagcagaaaattgacagtctcagttttgatttccattctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat