Sequence
atgc intronic sequence ATGC exonic sequenceAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaa----atgctagttttgtgtagcctt
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AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatcta----tcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G015854_T01 (Zea mays), 5'ss of exon 2
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaaca---aatgctagttttgtgtagcctt---
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AAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACAGCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggatttacactctgctacttttcatgtgtatct----ttga--tttgactattatgcgattggtcggaagcattgagttctatgaatttgcttcttttcc
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 2
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaa-ttggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt
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AGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatattggttctttcccaagcctttctttttcatttttaagagctaaccttttttaattgatgcctgaaatttcttttagggttagtttggcggtatct-
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G26160.1 (Glycine max), 5'ss of exon 2
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaatt-----ggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt
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AGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGGTCCTTGATCATTGGTCAAACCAGgcatattggttttttctcaagcctttctaatttttcttttcacttttaagaacttttacattctctcaactgaaatttaga-gaatccatgttcattg--gct--
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G26160.2 (Glycine max), 5'ss of exon 2
---------------------------------------------------------------AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt
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GTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATgtacaaggtcttaactgctgcagcacttagtataatgctaaaccggtccttgatcattggtcaaaccaggcatattggttttttctcaagcctttctaat---------------------------------------------------------------------
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G07210.1 (Glycine max), 5'ss of exon 2
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcc--------tttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt--------------------
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--------GAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGCTCCTTGATCATCAGTCAAACCAGGCATATTGgttctttctcaagccagacttagtttgtttttcacttttaagagcttctacattctctctcaactgaaatttagagtgtatatcgatgtttattggtccttatatgaatgtctttggtag
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G26840.1 (Glycine max), 5'ss of exon 2
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaat-tggcttttctctataatgaattta-gttataaacaaatgctagttttgtgtagcctt------------------------------------------
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--------------------------------------------ACTGCTGCAGCACTGAGTATAATGTTAAACCGGTCCTTGATCATTGGCCAAACCAGGCATATTGGTTCTTTCCCAAGCCTTTCTTTTTCATTTTTAAGAGgtaacctttttctttttttaatggatgcctgaaattctaactagtaactagtagtttctttaagggttagtttggctgtatccctttaaagatgggggct
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcata--ttggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt--------------------
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AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatccttttt-ctctatatt---aactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ06550 (Selaginella moellendorffii), 5'ss of exon 1
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctt-----tctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt
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GAGCTAAAGAGGACGGCTTTGGTAATGAAATGTACAAGATCTTGACTGCCGCTGGACTATCTCTGATGCTAAACCGATCGCTCATCGTCGGGGAGGACAGgtgcttcaaaccatttttcttctgtggatgcttgatctat-ttcttctctggcagctcccagaacccgggatatctaggactaaacgagag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718549|gb|FC069308.1|FC069308EST: GCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAG GGGCAAATTTCCTTTTGGGGATTACATATCCTACACTGATCTTGCCTTTAC
genomic: GCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggt ... ttctattcagGGGCAAATTTCCTTTTGGGGATTACATATCCTACACTGATCTTGCCTTTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt
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