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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAAgtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatgatgagatagaattgtttcctatcataggccatgtttggtataattattaaattgcctaatttatgattgttttcttgaatggag

Basic information

species Vitis vinifera
transcript Vv14s0068g01430.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G05570.1 (Glycine max), 5'ss of exon 2
GAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAAgtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatga---tgagatagaattgttt--cctatcataggccatgtttggt------ataattattaaattgcctaatttatgattgttttcttgaatggag
| |||||||| || ||||||||||||||||| |||||||| |  || |||| ||  |  |||| | ||  ||||  |||      ||  |  ||||    |   |    || ||    |  |  ||| |       ||||||   ||| |  | |   | |  |      | |  | ||| || |      |||  |   |||||  ||  ||  |  ||||||||||||||| ||
GGATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGAAGgtttgtgttcatttaattttaag-gcc------taagtgcacccaccaaattttcattt-taggaatgcgctttttaggtgatgagatgaatttgaaagggtaccttctagctggatgttgctcctgtgtgattaactgatatgtgagaaattctctttttgttttttgttttcttgaatgaag

upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G27200.1 (Glycine max), 5'ss of exon 2
GAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAAgtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatgatgagatagaattgtttcctatcataggccatgtttggtataattattaaattgcctaa----tttatgattgttttcttgaatggag
| |||||||| || ||||||||||||||||| |||||||| |  || || | ||  |  |||| | ||  ||||  | ||    |     |||       |   || |  || |||| |  | |  | | |    |   ||| |  | ||  |   |||       | |      ||||  || ||  | |  ||    |     || |  || |||||| ||||| ||
GGATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGGAGgtttgtgttcatttaattttaa--ggcctaagtgcaccaaattttc--attttaggaatgcactttttaggcgattagatgaatt--tgaagccaaagtgtatcttctagctggatggtgctcttgggttattttctgatatgtgagagatactttttttttttttctcgaatgaag

upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G05580.1 (Glycine max), 5'ss of exon 2
GAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAAgtaagcattcactcaaacttaattgcc--ccttattagttaaacc--cgtggagaatatgcttgtacttgtctgtctt-tgaa---aaagctagatgatgagatagaattgtttccta-tcataggccatgtttggtataattattaaattgcctaatttatgattgttttcttgaatggag
| |||||||| || ||||||||||||||||| |||||||| |  || |||| ||  |  |||| | ||  ||||   |   |   | |    |||    | |       ||||   || | |    |    ||||    |||| | |   |    |  |  ||  |  |  || | ||  || |   | |||  |   ||||    |  ||| |  || |||||||||||| ||
GGATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGAAGgtttgagttcatttaattttaaggcctaactgcactcaccaaattgtcattttaggaatgcacatattaggtgatgagatgaatttgaagccaaagtgtatcttctagctggatggtgctcttgggttatttactg-atatgtgagaaatacgtttttttgttctt-ttttcttgaatgaag