1 5' 3' | 2 5' 3' | 3 5' 3' |
AGCTGCTTGCTCGATCGTTCGTGAATTTCAAGTCTCTGGTTTTAGTCAGCTGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctggctgttcattttttagtttactttagctagtatttttgcatatttttataagttgttgcctcttctgtccctttcatttatttgttttta...
species | Vitis vinifera |
transcript | Vv14s0068g01330.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAG GTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGEST: gi|110724289|gb|EE099987.1|EE099987
genomic: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctg ... tctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
EST: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAG GTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGEST: gi|71861796|gb|DT010851.1|DT010851
genomic: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctg ... tctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
EST: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAG GTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGEST: gi|71879828|gb|DT028883.1|DT028883
genomic: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctg ... tctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
EST: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAG GTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGEST: gi|71880512|gb|DT029567.1|DT029567
genomic: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctg ... tctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
EST: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAG GTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGEST: gi|71865080|gb|DT014135.1|DT014135
genomic: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctg ... tctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
EST: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAG GTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGEST: gi|46917985|gb|CN547314.1|CN547314
genomic: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctg ... tctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
EST: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAG GTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGGEST: gi|71880441|gb|DT029496.1|DT029496
genomic: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctg ... tctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
EST: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAG GTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
genomic: TGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctg ... tctaatctagGTTTCTTAGAGAGCTTGACTTGCAAGAAAATGAAGTTGAGGATCGCAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCTTGCTCGATCGTTCGTGAATTTCAAGTCTCTGGTTTTAGTCAGCTGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtaggagctggctgttcattttttagtttactttagctagtatttttgcatatttttataagttgttgcctcttctgtccctttcatttatttgttttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc