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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTACAGCCGGTCGAGGTCAAAGTTGTGGACAAAGGGGGAGACGTCATTGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCGCGATTCGgtatgttttttttactcctttttagttggatgcataaatgagcaggtcctttgtcattagatttgattctgaactatttctcag

Basic information

species Vitis vinifera
transcript Vv14s0068g00910.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00910.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g16940.1 (Oryza sativa), 5'ss of exon 2
ATTCTACAGCCGGTCGAGGTCAAAGTTGTGGACAAAGGGGGAGACGTCATTGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCGCGATTCGgtatgttttttttactcctttttagttggatgcataaatgagcaggtcctttgtcattagatttgattctgaactatttctcag------
|||||| ||||| ||  ||||    ||||||||||| |||||||| ||| |||||||||| ||| | |||||||||||  | || ||||| || ||||| ||| |  ||  ||    |  |         ||| | | ||   |       ||  | | |  ||| || |    | || || |       
ATTCTATAGCCGTTCACGGTCTTCATTGTGGACAAAAGGGGAGACATCAATGAATTTCATCAATGTGCATGACATTTTCTTGGACTGTGACCGTGATTCTgtaagccttgcttgtcacgatgcttacttttgcttcagtggata--ctaactgctaattgggttgtttgtttttttttcctgaaacatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110382332|gb|EC939187.1|EC939187
EST:     TGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCACGATTCG                         ATAATATACCTTGGGAAGCCTGATGGGCCTACTTGCCACACTGGATCTGAA
genomic: TGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCGCGATTCGgtatgttttt ... tatttctcagATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAA
EST: gi|351017321|gb|FQ435673.1|FQ435673
EST:     TGAATTTCATTAATATTCATGACATTTTTCTTGGTTGTGATCGCGATTCG                         ATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAA
genomic: TGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCGCGATTCGgtatgttttt ... tatttctcagATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAA
EST: gi|351015089|gb|FQ444378.1|FQ444378
EST:     TGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCGCGATTCG                         ATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAA
genomic: TGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCGCGATTCGgtatgttttt ... tatttctcagATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAA
EST: gi|161712665|gb|FC062237.1|FC062237
EST:     TGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCGCGATTCG                         ATAATATACCTTGGGAAGCCTGATGGGCCTACTTGCCACACTGGATCTGAA
genomic: TGAATTTCATTAATATTCATGACATTTTTCTTGATTGTGATCGCGATTCGgtatgttttt ... tatttctcagATAATATACCTTGGGAAGCCTGACGGGCCTACTTGCCACACTGGATCTGAA