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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGACCAAGAACCATGAAGACCACAGCACTGATTTGGAGAAGACAATAGAAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaattttcctcctctcttcctcccatattggtaattggtatagaaggattgttaccactcttaattaaaattctgaggttttgatttttatcctatgtttgcttgtcag

Basic information

species Vitis vinifera
transcript Vv14s0068g00870.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00870.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G26440.1 (Glycine max), 5'ss of exon 1
ACAGACCAAGAACCATGAAGACCACAGCACTGATTTGGAGAAGACAATAGAAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaattttcctcctctc-ttcctcccatattggtaattggtatagaaggattgt-taccactcttaattaaaattctgaggttttgatttttatcctatgtttgcttgtcag
|  ||  |||    | | ||| || |     |||   ||| ||| ||||||||| || |||||||||||||| || ||  ||||||| |||||||| ||||||   | |    |   ||  | |  |   ||      || |||| | |        || || | |   ||    |||                                    
ATGGAAAAAGGGAAAAGTAGATCAAATGGGAGATGCAGAGGAGATAATAGAAGTGCTTATGATTTCTTCACCAAAACGTGATGACCTTGTGTTTCCAAAGgtattgtctgaaccaattcacttcatcagcatgaaccctttgtattgtattgcaaagtatcatttt--gttctctttccag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402883|gb|CF208510.1|CF208510
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|32265358|gb|CD716211.1|CD716211
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|30296756|gb|CB973550.1|CB973550
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|30296688|gb|CB973482.1|CB973482
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|110412202|gb|EC977942.1|EC977942
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|32272355|gb|CD721514.1|CD721514
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|30324328|gb|CD007590.1|CD007590
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|110389979|gb|EC954859.1|EC954859
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|110417324|gb|EC983371.1|EC983371
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|33402870|gb|CF208497.1|CF208497
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
EST: gi|77587339|gb|DV222811.1|DV222811
EST:     AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAG                         GGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC
genomic: AAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaatttt ... tgcttgtcagGGTGGATGGGAGGATGATGAGACCGTTGAAGAAGCAGCATGCCGTGAAGCC