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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAGTTCGAGGCAAAGGATACTGCAATTGGTAAAGGAGACCTCCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccctcttctttttccctttctcctttttactttacaccttagtccttccctcttttttttttcttttaatgattaaaaaaagaaagaaaaatac...

Basic information

species Vitis vinifera
transcript Vv14s0068g00800.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860322|gb|DT009377.1|DT009377
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|351039919|gb|FQ464957.1|FQ464957
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCNATGTCGAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|351032434|gb|FQ458799.1|FQ458799
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|110713687|gb|EE089836.1|EE089836
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|351054689|gb|FQ462719.1|FQ462719
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCACGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|351016153|gb|FQ435473.1|FQ435473
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|110718584|gb|EE095585.1|EE095585
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|30252786|gb|CB970337.1|CB970337
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|110405448|gb|EC970989.1|EC970989
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|110406346|gb|EC971916.1|EC971916
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|110403781|gb|EC969537.1|EC969537
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|351034888|gb|FQ458245.1|FQ458245
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCGAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|30126331|gb|CB911670.1|CB911670
EST:     GCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: GCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|30131604|gb|CB916943.1|CB916943
EST:     GCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: GCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|352773913|gb|FQ473045.1|FQ473045
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|37184531|gb|CF603885.1|CF603885
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|110713854|gb|EE090137.1|EE090137
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|110700860|gb|EE077882.1|EE077882
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|110423298|gb|EC989640.1|EC989640
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|351031591|gb|FQ459848.1|FQ459848
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|349824290|gb|FQ417701.1|FQ417701
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|351027941|gb|FQ425842.1|FQ425842
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC
EST: gi|34542448|gb|CF510680.1|CF510680
EST:     CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAAT                         CCAAGTAAGAAAGTTGAGGATGCATAGCTTGCAAGAGATTTTCAAACTACC
genomic: CCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccct ... gattcttcagCCAAGTAAGAAAGTTGAGGATGCAAAGCTTGCAAGAGATTTTCAAACTACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATAGTTCGAGGCAAAGGATACTGCAATTGGTAAAGGAGACCTCCGCTAAGCTCAAATCCCTCAGCGAATCCGATCATGCTGCCAATGTCAATgtatctccctcttctttttccctttctcctttttactttacaccttagtccttccctcttttttttttcttttaatgattaaaaaaagaaagaaaaatac

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa