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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatacaacttttcttccttttatggtgatcctaatattctcttttgaaccatgaatcctgtcttactcagatgttgttgtattgattacaatag

Basic information

species Vitis vinifera
transcript Vv14s0068g00720.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 3
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatacaacttttcttccttttatggtgatcctaatattctcttttgaaccatgaatcctgtcttactcagatgttgttgtattgattacaatag-----------------
|| ||  | |||||  | |||||||||||||| ||||| || || |||| | | ||||||||||||||||||||||| |  |   |  |  ||   |    |||    | |    |||       | |  |   ||  |  |     ||      |||    | ||    |  | |                  
GCTCGCCGTGGTGGAGTGGATGAACCATTTGCTTGGGAAAGCAGGGAGTTTCTAAGGAAACTCTGCATAGGAAAGgtactccatgtgaattttagatcttctttgaatttacttaaatgcatagatatcgattgtgt-ttgtagaaaacatgccagtttccctgttaccaatgaaaaattcaaacatgttacag

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatacaacttttcttccttttatggtgatcctaatattctcttttgaaccatgaatcctgtcttactcagatgttgttgtattgattacaatag
|| ||| | |||||  ||||||| || ||||||||||| || ||||||| | ||||||| ||||||||||| |||||||  |  ||   |  ||  |  ||| |  |      || ||||  |   ||| |   |   |  | |   |||   |  || |  | |    |  || ||
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctac--atttgaacttcatatcttctccga--gctctcatatcattcattgtattcttttttttttgacactgcaaaattataatctcctgt-taacag

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 3
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatac-aacttttcttccttttatggtgatcctaatattctcttttgaaccatgaatcctgtcttactcagatgttgttgtattga-ttacaatag-----------------------------------------------------------------
|| |||||||||||| | || || || ||||||||||| || ||||||| | ||||||| ||||||||||| ||||||| |   | |   |  |    | | || ||  |||| |   |  |     |   ||||  | |    ||| | ||   ||| || || |||  ||    | |                                                                 
GCGCGTAGAGGTGGTGTGGACGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattgat--tgattcagttgctactactactaccactactttgatctga-tcgagtgtggtggttttgtcttgttttggtgaaagcgtgcaatgtgtctctgatgtgatggttttgttgggattttattttttttttggaacag

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 3
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcct------ctcatacaacttttcttcctt--ttatggtgatcctaatattctcttttgaaccatgaatcctgtcttact-cagatgttgt-tgta--ttgattacaatag-------------------------------
|| |||||||||||| | || || || ||||||||||| || ||||||| | ||||||| ||||||||||| ||||||| |       | | | |   ||  ||  ||  ||  | || | ||| || |     ||||    ||  |  ||||||  | | | ||  |  || |  |||  |   ||                                 
GCGCGTAGAGGTGGTGTGGACGAGCCTTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgcgttgaaaattgaaatagagttcattggttgattcagttgctactactactactacttgagtgttgg-ttttgtcttgtttctggtgaagcgtgcaatttgtctctgatgtgatgggtatgttggaaatttttttggaacag

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 3
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatacaacttttctt--ccttttatggtg------atcctaatattct-cttttgaaccatg-aatcctgtcttactcagatgttg---ttgtat-tgattacaatag
|| |||||||||||| | ||||| || ||||||||||| |||||||||| | |  |||| |||||||| || |||||       ||   | |||| ||  ||  || | ||       |  ||  || ||| ||| ||     |  |      || | || ||    ||   | |||| |||||  || ||
GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaatgatattttttttttcccgttttagtagctcttactctggtagtctgcttgtgttttttttagataaatcattctaagtctctgacctggtatatgattggaacag

upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 3
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatacaacttttcttccttttatggtgatcctaatattctcttttgaaccatgaatcctgtcttactcagatgttgttgtattgattacaatag
|| || ||||| ||||| ||||| || ||||||||||| || | ||| | |||||||||||| ||||||||||||||||       | || |  |    |  ||||  |   |    |||| |   |   || ||  ||  | || |    || | || ||  |  |          
GCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAAAGAATTTTTGAGGAAACTTTGCATAGGAAAGgtgcaaagt-caaaattaataactcagttattatacactagctattgtgagt--gactat--attttctcatctcaagtttttatttgacag----------