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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGCGGATGGGGAATATAACGATCCCTTCAATGAAGGTGCAGGCAGCCAAGGGACTTTCTTTGGCAGGAACATCCTTCCTGTTGATCAGAAAGATAAGgtactacttaattagtttcttatcctctattttgaggatcagcttcaacaccaaaagttcactaacatgttaaaagtaacgatagcaatgaataaatgtgcagtgtatggcctgtaatcttgcagtgatctttttcttaattttgatgatctgattgtaattcaatacattcatatag

Basic information

species Vitis vinifera
transcript Vv14s0066g01670.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 2
GACGGCGGATGGGGAATATAACGATCCCTTCAATGAAGGTGCAGGCAGCCAAGGGACTTTCTTTGGCAGGAACATCCTTCCTGTTGATCAGAAAGATAAGgt----actacttaattagtttcttatcctctat--tttgaggatcagcttcaacaccaaaagttcactaacatgttaaaagtaacgatagcaatgaataaatgtgcagtgtatggcctgtaatcttgcagtgatctttttcttaattttgatgatctgattgtaattcaatacattcatatag
 || || |||||  ||||||| || |||||||| |||| | | |||||||| || |||||||||||||| ||||| || ||||| ||||||||| | |||||    | ||  |||||| | ||| | ||| |||  |||    ||    || || | ||        |||| || |   |  | |  ||   | | | |||| ||| |                                                                            
AACAGCTGATGGAAAATATAATGACCCCTTCAACGAAGTTTCTGGCAGCCACGGAACTTTCTTTGGCAGAAACATTCTCCCTGTGGATCAGAAAAAAAAGgtccacaataactaattaatatctcagcctatatattttataaatttcttttaatatcag-----tcctaaaatat---agctgattattcaactaactaaaagtgaa----------------------------------------------------------------------------

upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 2
GACGGCGGATGGGGAATATAACGATCCCTTCAATGAAGGTGCAGGCAGCCAAGGGACTTTCTTTGGCAGGAACATCCTTCCTGTTGATCAGAAAGATAAGgtactacttaattagtttcttatcctctattttgaggatcagcttcaacaccaaaagttcactaacatgttaaaagtaacgatagcaatgaataaatg-tgcagtgtatggcctgtaatcttgcagtgatctttttcttaattttgatgatctgattgtaattcaatacattcatatag
 || || |||||  ||||||| || || ||||| |||| ||| |||||||| ||||||||||||||||| || || || ||||| ||||||||| | ||||| |    ||| || | ||| | ||| |||    |  |  ||||  ||||     | ||   |||  | ||  || || |  |   ||   |||  || | ||    ||                                                                      
AACAGCTGATGGAAAATATAATGACCCTTTCAACGAAGTTGCTGGCAGCCATGGGACTTTCTTTGGCAGAAATATTCTCCCTGTGGATCAGAAAAAAAAGgtccacaataactaatatctcaccctatatacatacaa--agct--aaca-----aattttgtaattttttttaa-tatcagtcctaaaatatacctgattcaactaatt---------------------------------------------------------------------

upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G01480.1 (Glycine max), 5'ss of exon 2
GACGGCGGATGGGGAATATAACGATCCCTTCAATGAAGGTGCAGGCAGCCAAGGGACTTTCTTTGGCAGGAACATCCTTCCTGTTGATCAGAAAGATAAGgtactacttaattagtttcttatcctctattttgaggatcagcttcaacaccaaaagttcactaacatgttaaaagtaacgatagcaatgaataaatgtgcagtgtatggcctgtaatcttgcagtgatctttttcttaattttgatgatctgattgtaattcaatacattcatatag
 || |  |||||  ||||||| || || ||||| |||| ||| |||||||||||| ||||||||||||| || || || ||||| ||||| ||| | ||||| | ||  ||||    ||| |||||  |      | ||    || | |     || || |  || |    |||| |||    ||   | | ||||  |    | ||                                                                       
AACAGATGATGGAAAATATAATGACCCTTTCAACGAAGTTGCTGGCAGCCAAGGGTCTTTCTTTGGCAGAAATATTCTCCCTGTAGATCATAAAAACAAGgt-ccac--aatttacatctcatcctacaaac-atgtatacaattaagctaatgaattttataaaaaa---aaaaataatatcagtcctaattaaaactatttttta-----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717077|gb|FC066549.1|FC066549
EST:     AAGGGACTTTCTTTGGCAGGAACATCCTCCCTGTGGATCAGAAAGACAAG                         CTAAAGAAGCCGGATCCAATGGTGGTGGCCACAAAACTTCTGGCGCGGAAA
genomic: AAGGGACTTTCTTTGGCAGGAACATCCTTCCTGTTGATCAGAAAGATAAGgtactactta ... attcatatagCTAAAGAAGCCGGATCCAATGGTGGTGGCCACAAAACTTCTGGCGCGGAAA