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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCGGGGATCGACGATGATGGTTCCATCTGGGTCTGTGTTCCTCGTTAAACCGATAACTTTCTCGGGCCCTAACTGCGAACCAAACATTGTATTTCAGgtgagttacacatattcactatctgattcctgttccaacatcatgagaaatctattcacggagagtttgatagagttgttgttgatggactgagcctttgagaatgtttcttttgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g01060.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G08730.1 (Glycine max), 5'ss of exon 2
GGTTCGGGGATCGACGATGATGGTTCCATCTGGGTCTGTGTTCCTCGTTAAACCGATAACTTTCTCGGGCCCTAACTGCGAACCAAACATTGTATTTCAGgtgagttacacatattcactatctgattcctgttccaacatcatgagaaatctattcacggagagtttgatagagttgttgttgatggactgagcctttgagaatgtttcttttgcag
|||   ||| || || ||| | ||||||||||| ||||| ||  | || ||||| ||  ||||||| |||||||| || || ||||||||||| ||||||||||   |   |  ||||     |    | | ||||      ||  |  | |     ||    | |   | | ||     ||  |||| |      |||||     | | ||      
GGTGGAGGGCTCAACAATGGTTGTTCCATCTGGTTCTGTATTTTTGGTGAAACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAGgtgaaggaatta-gttcatctcttcccacattttcctctcctatatgtcaccc---tacaagcactagaacatag-----gtcaatggccc---tttttgacttaatatttt------

upper sequence: Vv14s0066g01060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G00230.1 (Glycine max), 5'ss of exon 2
GGTTCGGGGATCGACGATGATGGTTCCATCTGGGTCTGTGTTCCTCGTTAAACCGATAACTTTCTCGGGCCCTAACTGCGAACCAAACATTGTATTTCAGgtgagttacacatattcactatctgattcctgttccaacatcatgagaaatctattcacggagagtttgatagagttgttgttgatggactgagcctttgagaatgtttcttttgcag
|||   ||| || || ||| | ||||||||||| ||||| ||  | || ||||| ||  ||||||| |||||||| || || ||||||||||| ||||||||||   |   |  | ||     |    | | ||||      ||  |  | |     ||  | | |     ||||    | | |    |  |  |||||  || |   |         
GGTGGAGGGTTCAACAATGGTTGTTCCATCTGGTTCTGTATTTTTGGTGAAACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAGgtgaaggaatta-gtccatctcttcccacattttcctctcctatatgtcaccc---tacaaacact-----agagcatatataggccaatggcccctttttgacttaat---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716872|gb|FC068800.1|FC068800
EST:     AACCGATAACTTTCTCGGGCCCTAACTGCGAACCAAACATTGTATTTCAG                         TTGGATGGGAAGATCATTGCTCCTAGAAGCTCCAGTGCTTGGGGATCAGGG
genomic: AACCGATAACTTTCTCGGGCCCTAACTGCGAACCAAACATTGTATTTCAGgtgagttaca ... tcttttgcagTTGGATGGGAAGATCATTGCTCCTAGAAGCTCCAGTGCTTGGGGATCAGGG