Sequence
atgc intronic sequence ATGC exonic sequenceAGGTCAATGGCTTTATGCAAATGGTTGTCGTACTTTTCCTGAGTTTAACATGGATGACTTGACACACGATGAGGATCTTTATGATAGCTACTCTGAAATGgtaaatggtttataaacttttccttttttgttttatcttgctccataatttatggtagttagaagccaacaattgttgtggaaagatagttgctgaaaag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G29230.1 (Glycine max), 5'ss of exon 2
AGGTCAATGGCTTTATGCAAATGGTTGTCGTACTTTTCCTGAGTTTAACATGGATGACTTGACACACGATGAGGATCTTTATGA---TAGCTACTCTGAAATGgtaaatggtttataaacttttccttttt---tgttttatcttgctccataatttatggtagttagaagccaacaattgttgtggaaagatagttgctgaaaag
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---TCAATGGCTATATGCTAATGGTTGTCGCTCATATCCTGAATTTAGCATGGATGAGTGGACTCACGATGAGGATCTTTATGATCTTAGCTACTCTGAGATGgtaatagtccagttaacttatggtttgtttatgttttattttatgcttgcctctgaacacagccttgataaataattcctttattgat-taggtgtttatg--
upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G42100.1 (Glycine max), 5'ss of exon 2
AGGTCAATGGCTTTATGCAAATGGTTGTCGTACTTTTCCTGAGTTTAACATGGATGACTTGACACACGATGAGGATCTTTATGA---TAGCTACTCTGAAATGgtaaatggtttataaacttttccttttttgttttatcttgctccataatt-tatggtagttagaagccaacaattgtt-gtggaaagatagttgctgaaaag
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---TCAGTGGCTTTATGCTAATGGTTGTCGATCATATCCAGAATTTAGCATGGATGAATGGACACATGATGAGGATCTATATGATCTTAGCTACTCTGAAATGgtaatattcacatgaccttataattgtttctgccattttgtttctctattacatcataagtatgtgtttgcattggtttattttacaatcagccttaaat--
upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G38050.2 (Glycine max), 5'ss of exon 2
AGGTCAATGGCTTTATGCAAATGGTTGTCGTACTTTTCCTGAGTTTAACATGGATGACTTGACACACGATGAGGATCTTTATGA---TAGCTACTCTGAAATGgtaaatggtttataaacttttccttttt---tgttttatcttgctcc-ataatttatggtagttagaagccaacaattgttgtggaaagatagttgctgaaaag
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---TCAATGGCTATATGCTAATGGTTGTCGGTCATATCCTGAATTTAGCATGGATGAGTGGACTCACGATGAGGACCTTTATGATCTTAGCTACTCTGAGATGgtaatagtcttattaacttgtggtttatttgtgttttattttatgcttgtgactgaacacagccttgcattaatacttcctttattgat-tgggtgtttat---
upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G39490.1 (Glycine max), 5'ss of exon 2
AGGTCAATGGCTTTATGCAAATGGTTGTCGTACTTTTCCTGAGTTTAACATGGATGACTTGACACACGATGAGGATCTTTATGA---TAGCTACTCTGAAATGgtaaatggtttataaacttttccttttttgttttatcttgct-ccataatttatggtagttagaagccaacaattgtt-gtggaaagatagttgctgaaaag
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---TCAGTGGCTTTATGCTAATGGTTGCCGATCATATCCAGAATTTAGCATGGATGAATGGACACATGATGAGGATCTATATGATGTTAGCTACTCTGAAATGgtaatagtcacatgaccttataattgtttttgccattttgtttctctagtacatcataagtatgtgtttgcattggtttattttataatcagccttaaat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294966052|gb|GW837419.1|GW837419EST: TGGACGACTTGACACACGATGAGGATCTTTATGATAGCTACTCTGAAATG TCCTTTGGGGTTCACTGGTGTCCATTTAGTGGATTGACACGTCTTCCTTCA
genomic: TGGATGACTTGACACACGATGAGGATCTTTATGATAGCTACTCTGAAATGgtaaatggtt ... gtttttgcagTCCTTTGGGGTTCACTGGTGTCCATTTAGTGGATTGACACGTCTTCCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTCAATGGCTTTATGCAAATGGTTGTCGTACTTTTCCTGAGTTTAACATGGATGACTTGACACACGATGAGGATCTTTATGATAGCTACTCTGAAATGgtaaatggtttataaacttttccttttttgttttatcttgctccataatttatggtagttagaagccaacaattgttgtggaaagatagttgctgaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaaaa