Sequence
atgc intronic sequence ATGC exonic sequenceGGAAAGATCTGTCTCGTACAATGAGCACAGGCCAAGGAGGCCTCCACCGGACTTGCCTTCCCTGCTTCTCCATGGGAGAATAGTTTACATTGGCATGCCAgtaagtagttaaatgcaatatttctctctatgaaacttatcaaaaaaaaaaatatatttctctctaggaatataattctttttggtggaaatcaaaacac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g22430.1 (Oryza sativa), 5'ss of exon 2
GGAAAGATCTGTC---TCGTACAATGAGCACAGGCCAAGGAGGCCTCCACCGGACTTGCCTTCCCTGCTTCTCCATGGGAGAATAGTTTACATTGGCATGCCAgtaagtagttaaatgcaatat-ttctctctatgaaacttatcaaaaaaaaaaatatatttctctctaggaatataattctttttggtggaaatcaaaacac----
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---ACGATCTAGCAGTTCTTACAGCCAGCACAGGCCTAGAAGGCCTCCCCCTGACTTGCCATCATTGCTTCTTCATGGCCGAATTGTTTACATTGGCATGCCGgtatg-----aattgcaccatgttctctatgtgaaatattttcttcaagtcttactatttacatatgtggatgtaaaacatgatgacaagaatgttggtgaggtc
upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G42180.2 (Glycine max), 5'ss of exon 2
GGAAAGATCTGTCTCGTACAATGAGCACAGGCCAAGGAGGCCTCCACCGGACTTGCCTTCCCTGCTTCTCCATGGGAGAATAGTTTACATTGGCATGCCAgtaagtagttaaatgcaa--tatttctctctatgaaacttatcaaaaaaaaaaat-atatttctctctag-gaatataattctttttggtggaaatcaaaacac---------------------------
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TGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCTGACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCTgtaagtgttcaattgtcaattgtgtattgttttatgtgttattgcatctggttccgattctgctgtttattgcagttaatactttgttgttgcaatttgtacaacctgctatgactgtttttgaatctcag
upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G39570.1 (Glycine max), 5'ss of exon 2
GGAAAGATCTGTCTCGTACAATGAGCACAGGCCAAGGAGGCCTCCACCGGACTTGCCTTCCCTGCTTCTCCATGGGAGAATAGTTTACATTGGCATGCCAgtaagtagttaaatgcaatatttctctctatgaaacttatcaaaaaaaaaaatatatttctctctaggaatataattctttttggtggaaatcaaaacac---------------------------
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TGAAAGATCTGTTTCATACAACGAACACCGACCCAGAAGGCCACCGCCTGACCTGCCTTCGCTGCTTCTCCATGGTAGAATTGTTTACATTGGCATGCCTgtaagtgttcaattgtg-tattgctttatgtgttattgcatttcgtgccgattctgctgtt-tgtgagagt-taatactttgctgttgtaatttgtacaacctgctatgactgtttttgaatctcag
upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G09130.3 (Arabidopsis thaliana), 5'ss of exon 2
GGAAAGATCTGTCTCGTACAATGAGCACAGGCCAAGGAGGCCTCCACCGGACTTGCCTTCCCTGCTTCTCCATGGGAGAATAGTTTACATTGGCATGCCAgtaagtagt-taaatgc--aatatttctctctatgaaacttatcaaa--aaaaaaaatatatttctctctaggaatataattctttttggtggaaatcaaaacac
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TGAAAGATCAGTGGCTTATAACGAGCACCGACCGAGAACTCCTCCACCAGACTTGCCATCTATGCTTCTTGACGGGAGAATTGTTTACATTGGAATGCCTgtaagttatgtggattcttatggattttttggttgggactgcatagactgatgatgacatattttgctttcag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110385484|gb|EC950016.1|EC950016EST: CCATGGGAGAATAGTTTACATTGGCATGCCA TTGGTGCCAGCTGTCACAGAGCTTGTCATTGCAGAATTAATGTACCTGCAG
genomic: CCATGGGAGAATAGTTTACATTGGCATGCCAgtaagtagtt ... attctatcagTTGGTGCCAGCTGTCACAGAGCTTGTCATTGCAGAATTAATGTACCTGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAAGATCTGTCTCGTACAATGAGCACAGGCCAAGGAGGCCTCCACCGGACTTGCCTTCCCTGCTTCTCCATGGGAGAATAGTTTACATTGGCATGCCAgtaagtagttaaatgcaatatttctctctatgaaacttatcaaaaaaaaaaatatatttctctctaggaatataattctttttggtggaaatcaaaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaca