1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCAGATAGTGATCGAGGTGTTTCTTGTACCTTTGGAGCTGATAAGGTTGCTGAATTTTTGGACAAGAATGATCTTGATCTCATTTGCCGAGGTCATCAGgtaagcaaagttctcattcacaatgcttgataacattcatgtacttttcctactttgttctatatagttgttttaagagcatcccaattcattaaagcca...
species | Vitis vinifera |
transcript | Vv14s0060g01750.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGAATTTTTGGACAAGAATGATCTTGATCTCATTTGCCGAGGTCATCAG GTGGTGGAGGATGGATATGAATTCTTTGCTAAACGACGATTAGTCACAATTEST: gi|110393373|gb|EC958562.1|EC958562
genomic: CTGAATTTTTGGACAAGAATGATCTTGATCTCATTTGCCGAGGTCATCAGgtaagcaaag ... tgaattgcagGTGGTGGAGGATGGATATGAATTCTTTGCTAAACGACGATTAGTCACAATT
EST: AAGAATGATCTTGATCTCATTTGCCGAGGTCATCAG GTGGTGGAGGATGGATATGAATTCTTTGCTAAACGACGATTAGTCACAATTEST: gi|110429218|gb|EC995708.1|EC995708
genomic: AAGAATGATCTTGATCTCATTTGCCGAGGTCATCAGgtaagcaaag ... tgaattgcagGTGGTGGAGGATGGATATGAATTCTTTGCTAAACGACGATTAGTCACAATT
EST: CTGAATTTTTGGACAAGAATGATCTTGATCTCATTTGCCGAGGTCATCAG GTGGTGGAGGATGGATATGAATTCTTTGCTAAACGACGATTAGTCACAATTEST: gi|30328639|gb|CD011901.1|CD011901
genomic: CTGAATTTTTGGACAAGAATGATCTTGATCTCATTTGCCGAGGTCATCAGgtaagcaaag ... tgaattgcagGTGGTGGAGGATGGATATGAATTCTTTGCTAAACGACGATTAGTCACAATT
EST: TTTGCCGAGGTCATCAG GTGGTGGAGGATGGATATGAATTCTTTGTTAAACGACGATTAGTCACAATT
genomic: TTTGCCGAGGTCATCAGgtaagcaaag ... tgaattgcagGTGGTGGAGGATGGATATGAATTCTTTGCTAAACGACGATTAGTCACAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGATAGTGATCGAGGTGTTTCTTGTACCTTTGGAGCTGATAAGGTTGCTGAATTTTTGGACAAGAATGATCTTGATCTCATTTGCCGAGGTCATCAGgtaagcaaagttctcattcacaatgcttgataacattcatgtacttttcctactttgttctatatagttgttttaagagcatcccaattcattaaagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagca