1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACATGGCTGGGGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattattttcatacacattcttatacctatttggggcaatgtttcattctctttattaatttggactttgaaatgtgtaacttgatttgacttcaatggtctggatatag
species | Vitis vinifera |
transcript | Vv14s0060g01290.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110732858|gb|EE108510.1|EE108510
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110372400|gb|EC936562.1|EC936562
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110700083|gb|EE077719.1|EE077719
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: AGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110687770|gb|EE065562.1|EE065562
genomic: AGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110699525|gb|EE076601.1|EE076601
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110732288|gb|EE107443.1|EE107443
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|29781779|gb|CB346544.2|CB346544
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: CGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|33401998|gb|CF207625.1|CF207625
genomic: CGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: CGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|30295872|gb|CB972666.1|CB972666
genomic: CGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTTTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTTTATGCTATATCAGCTGAGTACCEST: gi|110729565|gb|EE105649.1|EE105649
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110357396|gb|EC920905.1|EC920905
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110702773|gb|EE079035.1|EE079035
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110688081|gb|EE066225.1|EE066225
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|110727891|gb|EE105170.1|EE105170
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCEST: gi|30295943|gb|CB972737.1|CB972737
genomic: GGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
EST: CTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAG GTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
genomic: CTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattatttt ... ctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACATGGCTGGGGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAATGATAAAGgtattattttcatacacattcttatacctatttggggcaatgtttcattctctttattaatttggactttgaaatgtgtaacttgatttgacttcaatggtctggatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA