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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGAAAATGTGCTTGGTGAAGGTGGATATGGAGTGGTTTACAGAGGACAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTgtgagtttaaacatcgctccgttgtgtttccgactttgttatgatttcttatttattcctctggtgagttcttctagagtttaacttctaaacttattttcttcag

Basic information

species Vitis vinifera
transcript Vv14s0060g00460.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G28490.1 (Glycine max), 5'ss of exon 1
CAAAGGAAAATGTGCTTGGTGAAGGTGGATATGGAGTGGTTTACAGAGGACAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTgtgagtttaaacatcgctccgttgtgtttccgactttgttatgatttcttatttattcctctggtgagttcttctagagtttaact--tctaaacttattttcttcag----------
|||| ||||||||| ||||||| ||||| |||||||| |||||| | ||||||||||| |||||||| |||||||||||||||||||| ||||| ||| ||||||||  |     |   | |   | ||   | || |   |  | | || ||| ||  |    | | |||| | | | ||| |||  | |  | ||     | ||            
CAAAAGAAAATGTGATTGGTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGATTAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATgtgagttccagggggggggcctaaggctttgaatttggggttattgttttgttttttatttctcttacttctgccaaactttgactggtttttatttccacccctcctttttctgcag

upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G22550.1 (Glycine max), 5'ss of exon 1
CAAAGGAAAATGTGCTTGGTGAAGGTGGATATGGAGTGGTTTACAGAGGACAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTgtgagtttaa--acatcgctcc--gttgtgtttccgactttgttatgatttcttatttatt---cctctggtgagttctt-ctagagtttaacttctaaacttattttcttcag
|||| ||||||||  ||||||| ||||| |||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||| ||||| ||| ||||||||  |  |||  |   |  | | ||  |      |  ||||  ||| || ||| |    | |||| | |  | |  ||||  ||||  | |    ||  |||||| |||
CAAAAGAAAATGTAATTGGTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGATCAACGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATgtgagttccagtacaatgtctcaggctttgagtttacactaattattgttttttgtttctcttacttctgctaaactttgactagtttttatttccacccctccttttctgcag

upper sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G38800.1 (Glycine max), 5'ss of exon 1
CAAAGGAAAATGTGCTTGGTGAAGGTGGATATGGAGTGGTTTACAGAGGACAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTgtgagtttaa--acatcgctccgttgtgt-ttccgactttgtta-tgatttcttatttattcctctggtga----gttcttctagagtttaacttctaaacttattttctt--cag
| || |||||||| || |||||||| || |||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| || || |||  ||||| || |  |||  || |  || |   ||     |   |||     ||  | |||||||||||   |      |||  ||| | || |||| ||||  || || | ||  |||
CCAAAGAAAATGTCCTCGGTGAAGGCGGCTATGGAGTGGTTTATAGGGGACAGTTGATCAATGGAACTCCAGTGGCAGTTAAAAAGATACTTAATAACACgtgagcttcagtacagtgcccaattatccattatagttaccttagctgctttgtttttattcctctctagtctctattcggctaaaattcaactcctaagttttttgttttagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719711|gb|FC065745.1|FC065745
EST:     CAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCT                         GGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGT
genomic: CAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTgtgagtttaa ... ttttcttcagGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGT