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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCgtctgcacattcttcactctctctctatacgtctttttgtatatatttatgatttttaatttaaatgctcgtgcctttgcag

Basic information

species Vitis vinifera
transcript Vv14s0060g00210.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 5'ss of exon 2
GGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCgtctgcacat---tcttcactctctctctatacgtc--tttttgtatatattta-tgatttttaatttaaa--tgctcgtgcctttgcag----------
||| |||||||| || ||||| ||||| |||||||| |||||||||| |||||||||    || ||| | || ||||||||||||||||||||||||||||| ||| |     ||| | ||| |  |||    ||    |||   || |  | | | | ||    ||||    | ||   |||||||             
GGCGGACAATGCGCCCAAGGCGATGAAGGAGCAGAAGTTCGAGAGCTACTTCGGCCGGCGCATTGCCGTCGACGCCAGCATGAGCATCTACCAGTTCCTCgtatgcccccatgtctcctctcacattctgcgagttggctttgaaatgtgctcacttacttggggtttagggtttcttaagcctttgattgcgcgagaga

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G121262_T01 (Zea mays), 5'ss of exon 3
GGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCgtctgcacattcttcactctctctctatacgtctttttgtatatatttatgatttttaatttaaatgctcgtgcctttgcag-------------------
||| |||||||| || ||||| ||||| |||||||| |||||||||| ||||||||||||||||||| | || |||||||||||||| ||||||||||| || ||  |       || ||    ||  |  |||||||    |  ||      ||   ||  || ||   ||    ||||                     
GGCGGACAATGCGCCCAAGGCGATGAAGGAGCAGAAGTTCGAGAGCTACTTCGGCCGCAAAATCGCCGTCGACGCCAGCATGAGCATATACCAGTTCCTGgtgtgttccactccaacgctagtcct-catttctttttcctcacgttgtgtgcttaagatggaactggatgttttattgcctgttttgtggccaggatttt

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G398668_T01 (Zea mays), 5'ss of exon 2
GGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCgtctgcacattcttcactctctctctatacgtctttttgtatatatttatgatttttaatttaaatgctcgtgcctttgcag---------------------
|||  |  | || || |  |||  |    ||| |    | |||  || |  |||||||   |||||| |||| |||||| | ||||||||||||||||||||  |  |   |  ||  |   | || |  ||   |  |    | | |    |||||   | |  ||    ||| | ||                        
GGCGCAGCACGCACCGACAGCCGCGGTGCAGCGGCGGGTGGAGGACTACCGCGGCCGCGTCATCGCCGTAGACGCCAGCGTCAGCATCTACCAGTTCCTCgtgagtcctcgcgccagcccgcccctgtctgt---tcggcccctttcttcagttttttcgtgagttgtcgttgcgtctgtgaagtgggaacagtggatttctg

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G22190.1 (Glycine max), 5'ss of exon 2
GGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCgtctgcac-attcttcac------------tctctctctatacgtc--tttttgtatatatttatgatttt--taatttaaatgctcgtgcctttgcag---------------
||| ||||||||||| ||| ||||||| ||| | ||||||||||||| |||||| ||||| |||||||| || || ||||||||||| ||||||||||| ||| | || | ||||| |            | ||  | |  ||  |  |  |  || |  || || || ||  ||| ||||   | ||||  ||||                  
GGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCCATTGACGCTAGCATGAGCATTTACCAGTTCCTTgtcagtactaatcttcccaacacagcgtagtttcaatttcaaccacgatactaatacagtttaattatgttaataacttaatgtcacgtgtttttgtcttggattttggtgcag

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G28200.1 (Glycine max), 5'ss of exon 2
GGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCgtctgcac-attcttcactctctctctatacgtctttttgtatatatttatgatttt----taatttaa--atgctcgtgcctttgcag-------------------------------
 || ||||||||||| ||| ||||||| ||| | ||||||||||||| ||| || ||||| ||||| || || || ||||||||||| ||||||||||| ||| |  | | |||||||      |    ||||  |||    |  |   |||||  |     | | | |  ||| |  |  |||                                    
AGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTTGGTCGCAAGATCGCTATTGACGCTAGCATGAGCATTTACCAGTTCCTTgtcagtgctaatcttcacaacacatg---acgtagtttcaatttcaaccatgatactaatacagtgtgattatgttaataacttaatgtcacatgttatttgtcttggattttggtgcag

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G26680.1 (Arabidopsis thaliana), 5'ss of exon 2
GGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCgtctgcacattcttcactctctctctatacgtctttttgtatatatttatgatttttaatt-taaatgctcgtgcctttgcag
 || |||||||| || |     |||||||| ||||||||||||||||  || || || ||||||||  | ||||| ||||||||||| ||||| ||||||||  |  |   ||||     || | |||   |||   ||  |||| ||    ||| ||||| |   ||   ||| |   |   
AGCCGACAATGCGCCTAGTTGTATGAAAGAACAGAAATTCGAGAGCTATTTTGGTCGGAAAATCGCTGTTGATGCTAGCATGAGCATTTACCAATTCCTCgttcgtgc-cccttcttctcctttgtatcaatctcaatgagtatagtt----tttgtaattgtggttgaatgtgacacag---

upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S456_8V6.1 (Physcomitrella patens), 5'ss of exon 2
GGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCgt-----ctgcacattcttcactctct--ctctatacgtctttttgtatatatttatgatttttaatttaaatgctcgtgcct-ttgcag------------------------------------------------------------------------------------------------------------
 || |||||||| ||  |  | ||||||||||| ||||| ||||||| ||| || || ||||| || || |||||||||||||||||||||   || || ||      |    | |||| | |   |  | | || | ||||   |  | || ||   ||        ||| ||| ||      | ||||                                                                                                            
AGCGGACAATGCACCTGATTCGATGAAAGAGCAAAAATTTGAGAGCTACTTTGGTCGAAAAATAGCTATCGATGCCAGCATGAGCATCTACTCATTTCTTgtaagttttatgaagtctttattgaatggcgcaatccctcttacagcttctaattgc-ataagcgtaataattgcccggattggtcgcaggttgtgttttcaaacgattcgcgttccgtctatcgtgtatcgtgtccctcttccttcgtaatgatttattgcaaagtactacattgatttgatgctgttcttctgcag