Sequence
atgc intronic sequence ATGC exonic sequenceTCTTTGTCCCCTGCACCCTCATCCAAGCCTCGCATGCGCTGGACACCAGAAATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACgtatgtagcactatcagagatattctcttcttgatgtgattaggctctaaggaagcatgggccgtcgttttgtgttcacttttggttttaacttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0036g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G43690.2 (Glycine max), 5'ss of exon 3
TCTTTGTCCCCTGCACCCTCATCCAAGCCTCGCATGCGCTGGACACCAGAAATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACgtatgtagcactatcagagatattctcttcttgatgtgattaggctctaaggaagcatgggccgtcgttttgtgttcacttttggttttaacttacag
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TCAGCATCAACTGCACCGCAGACTAAGCCTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGTAGTGATAgtatgtttccgtctcc---ataatctc--------ataccttacctctggaatttttcttgtcatctcatgatgttaac-----aacttaacctgcag
upper sequence: Vv14s0036g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G04450.2 (Arabidopsis thaliana), 5'ss of exon 6
TCTTTGTCCCCTGCACCCTCATCCAAGCCTCGCATGCGCTGGACACCAGAAATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACgtatgtagcactatcagagatattctcttcttgatgtgattaggctctaaggaagcatgggccgtcgtt-ttgtgttcacttttggttttaacttacag
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CCACCAGCTAGTTCAATGACATCTAAGCAAAGAATGCGTTGGACACCAGAACTTCATGAAGCATTTGTCGAAGCTATCAATCAGCTCGGTGGTAGTGAACgtgcgtatgcccttt-----ttttttccttctcatgcctgcaaaatttagctgaaca--acttattattattctcttggcttataatttcaaaccacag
upper sequence: Vv14s0036g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G29000.3 (Arabidopsis thaliana), 5'ss of exon 3
TCTTTGTCCCCTGCACCCTCATCCAAGCCTCGCATGCGCTGGACACCAGAAATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACgtatgtagcactatcagagatattctcttcttgatgtgattaggctctaaggaagcatgggccgtcgttttgtgttcacttttggttttaacttacag
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TCATCATCTAGTGTAGCAACATCTAAACAACGTATGCGTTGGACACCAGAACTTCACGAGGCATTCGTTGAAGCTGTTAATCAGCTTGGTGGTAGTGAACgtgcgtaa-gctttct----ccttctattgttcctgaaaataattgctcaagga-tgttaaccgt-acactg-attcttctataatttcca-tcatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110364289|gb|EC923787.1|EC923787EST: AATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAAC GGGCGACTCCAAAGGGAATCTTGAAGCTTATGAATGTTGAAGGTCTGACCA
genomic: AATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACgtatgtagca ... taacttacagGGGCGACTCCAAAGGGAATCTTGAAGCTTATGAATGTTGAAGGTCTGACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTTGTCCCCTGCACCCTCATCCAAGCCTCGCATGCGCTGGACACCAGAAATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACgtatgtagcactatcagagatattctcttcttgatgtgattaggctctaaggaagcatgggccgtcgttttgtgttcacttttggttttaacttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG