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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAATCGAATTGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataacccctcttttttaccctcttttttcttggatttcctcaaagactggttcaaagtggcattagaatagaatatttctttgtgaaatggggtc...

Basic information

species Vitis vinifera
transcript Vv14s0036g00520.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965113|gb|GW836944.1|GW836944
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|161709680|gb|FC058437.1|FC058437
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|71861751|gb|DT010806.1|DT010806
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|29785385|gb|CB342317.2|CB342317
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|71862806|gb|DT011861.1|DT011861
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|71863335|gb|DT012390.1|DT012390
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|71863554|gb|DT012609.1|DT012609
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|71860885|gb|DT009940.1|DT009940
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|351043016|gb|FQ443858.1|FQ443858
EST:     TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|71864783|gb|DT013838.1|DT013838
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|161718610|gb|FC068205.1|FC068205
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
EST: gi|161714104|gb|FC064393.1|FC064393
EST:     TGCGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTAT                         TGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC
genomic: TGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataac ... ttgaatccagTGAAAATGGTTACTAGAACAGTGGATCTCCGGTCTGACACAGTCACCAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGACAGAGGTTAAAGGGTTTTCTCTGAAATCAAGGGGAAAGAATCGAATTGTGCCTTTCATCTGGGTTTGAGCGCAGAGAAGACGGACAGTTTGTTTATgtatgataacccctcttttttaccctcttttttcttggatttcctcaaagactggttcaaagtggcattagaatagaatatttctttgtgaaatggggtc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa