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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGCTCATTCCTTCTCTCCTGGACAAAGGCATTGGATTTTCTTCATCAAGTTTGTCTATGGTTCCAGGAATACCTATTAAGCCAATGCTTGCAAAgtatatatatgtattttgtgatttcttggtattttcttttacctcaggatgcttatccttgttgtagctgattgcttgtaacatttccctgtcttag

Basic information

species Vitis vinifera
transcript Vv14s0006g02210.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g02210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G53000.1 (Glycine max), 5'ss of exon 8
GATTTGCTCATTCCTTCTCTCCTGGACAAAGGCATTGGATTTTCTTCATCAAGTTTGTCTATGGTTCCAGGAATACCTATTAAGCCAATGCTTGCAAAgtatata----tatgtattttg-tgatttcttggtattttc----ttttacctcaggatgctt-atccttgttgtagctgattgcttgtaacatttccctgtcttag---------------------------------------------
||| |  |  |||| |||||| || ||||||||||||  |||||    |||||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||    |   ||| |||   ||||||||   | ||     || ||  ||| | |  |  | |||| |  || ||  |     ||  |   |  || | |||                                              
GATCTCATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAgtatatactgttccatatattggccatttcttgaattcttgatgattatatttcaagtttttagaaccttttcttaact--tcaggagtccccacttactttattaactcccaattgattcttttttccttgtattttccctttcttcatag

upper sequence: Vv14s0006g02210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G66730.1 (Arabidopsis thaliana), 5'ss of exon 9
GATTTGCTCATTCCTTCTCTCCTGGACAAAGGCATTGGATTTTCTTCATCAAGTTTGTCTATGGTTCCAGGAATACCTATTAAGCCAATGCTTGCAAAgtatatatatgtattttgtgatttcttggtattttcttttacctcaggatgcttatccttgttgtagctgattgcttgtaacatttccctgtcttag--
||  || |  ||||||||||| ||||||||| |||||  |||||  | |||| | |||| ||||| ||||| |||||||| || || ||||||||||||||  | |    ||  |       |  |  || ||  ||| |   |  | | |||    || ||     |  ||| | ||    | |  |   ||    
GACGTGGTTGTTCCTTCTCTCATGGACAAAGACATTGAGTTTTCAACGTCAACTCTGTCAATGGTCCCAGGGATACCTATAAAACCCATGCTTGCAAAgtaattgtgcagatact-------cacgacatctttgtttgcaagataacgattagaactgctg--atcgcatgcctttattgctgcttttcattgcag