Sequence
atgc intronic sequence ATGC exonic sequenceTAAGATGGACAAACTATCTGAGGCCAGACTTGAAAAGAGGTCTGTTGTCAGATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAGgtttatttttctcttttctttaggctatgaacccctcctttttctttatctattctgccctttccctctctgtctacccactgggatcatctgggatcat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G33620.1 (Glycine max), 5'ss of exon 2
TAAGATGGACAAACTATCTGAGGCCAGACTTGAAAAGAGGTCTGTTGTCAGATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAGgtttatttttctcttttctttaggctatgaacccctcctttttctttatctattctgccctttccctctctgtctacccactgg--gatcatctgggatcat-
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TCAGGTGGACAAATTATCTGAGGCCAGACTTGAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGgttctttcccctacacacactctgtttcc--cctgttctgcatgcttagccattccttaatgaacattttt-ttaattgattaattaattaactggtacagta
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G04580.1 (Glycine max), 5'ss of exon 2
TAAGATGGACAAACTATCTGAGGCCAGACTTGAAAAGAGGTCTGTTGTCAGATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAGgtttatttttctcttttctttaggctatgaacccctcctttttctttatctattctgccctttccctctctgtctacccactgggatcatctgggatcat-
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-CAGGTGGACAAATTACCTGAGGCCAGACCTGAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGGttctttccccacacaccctgtttcccctgttctacatgcttagccattccttaatgaactttttttaattgattaattaattaactggtacagtacttct
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G41180.1 (Glycine max), 5'ss of exon 2
TAAGATGGACAAACTATCTGAGGCCAGACTTGAAAAGAGGTCTGTTGTCAGATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAGgtttatttttctcttttctttaggctatgaacccctcctttttctttatctat-tctgccctttccctctctgtctacccactgggatcatctgggatcat---
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TCAGGTGGACAAATTACTTGAGGCCAGACTTAAAGAGAGGTCTTTTATCAGAATACGAAGAAAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGgttatttcctagcccactattttcccttg----tttgctttttctgcatgtatatttttccttgaagaacattactaataattataatcagtgattgttacagt
upper sequence: Vv14s0006g00450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G39530.1 (Glycine max), 5'ss of exon 2
TAAGATGGACAAACTATCTGAGGCCAGACTTGAAAAGAGGTCTGTTGTCAGATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAGgtttatttttctcttttctttaggctatgaacccctcctttttctttatctattctgccctttccctctctgtctacccactgggatcatctgggatcat--
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TGAGGTGGACAAATTACTTGAGGCCAGACTTAAAGAGAGGCCTTTTATCTGAATATGAAGAAAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGgtt-atttcctgatccactatttttcctttgtttgctttttctgcatgtttatttt-tccttgaaggacctttctaatcattaaaattaatgattactacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856377|gb|DT005432.1|DT005432EST: GATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAG ATGGTCCAAGATTGCTTCTCATCTACCAGGAAGAACCGATAACGAAATCAA
genomic: GATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAGgtttattttt ... ggatttgcagATGGTCCAAGATTGCTTCTCATCTACCAGGAAGAACCGATAACGAAATCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAGATGGACAAACTATCTGAGGCCAGACTTGAAAAGAGGTCTGTTGTCAGATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAGgtttatttttctcttttctttaggctatgaacccctcctttttctttatctattctgccctttccctctctgtctacccactgggatcatctgggatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc