Sequence
atgc intronic sequence ATGC exonic sequenceAAGTTTTTAAGACAGCCTCATTTTATAGTGTGGGATAATGGTGACCTTATAACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaagacagtttcccttagtgaattaggacttgggcattaaataacacacagtgatatattattgtacgatatgataaatccctttatatatatacgtgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g41590.1 (Oryza sativa), 5'ss of exon 2
AAGTTTTTAAGACAGCCTCATTTTATAGTGTGGGATAATGGTGACCTTATAACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaagacagtttcccttagtgaattaggacttgggcattaaataacacacagtgatatattattgtacgatatgataaatccctt-tatatatatacgtgt------
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AAATTTCTGAGGCAGCCTCATTTTATTGTGTGGGATAATAGTGATCTCATCACTCATGAAGTAATGGGCGGCTTAAAGAACATATATGCCATTGGTGCTGgtaagttccatggtctca-tatctgacgttttatgtcc---atatcaccttgaaa---atttttaactgggaaaataaaaccatcatgtggcttttcttgttgaagc
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g58740.1 (Oryza sativa), 5'ss of exon 3
AAGTTTTTAAGACAGCCTCATTTTATAGTGTGGGATAATGGTGACCTTATAACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaagacagtttcccttagtgaattaggacttgggcattaaataacacacagtgatatat-tattgtacgatatgataaatccctttatatatatacgtgt----
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AAATTTTTGAGGCAGCCTCATTTTATTGTATGGGATAATAGTGATCTCATTACACATGAAGTCATGGGAGGTTTGAAAAATGTGTATGCCATTGGTGCCGgtaatttctatttcctctcttgattgtttttgctatcttctgtaat-cacggtagagcatatactgt----tgtgatatttagcatggggtatgttggaatgcac
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 5'ss of exon 3
AAGTTTTTAAGACAGCCTCATTTTATAGTGTGGGATAATGGTGACCTTATAACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaagacagtttcccttagtgaattaggacttgggcattaaataacacacagtgatatattattgtacg-atatgataaatccctttatatatatacgtgt---
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AAGTTTCTGAGACAACCACATTTCATTGTCTGGGATAACAGTGATCTTGTTACACATGAGGTGATGGGTGGTTTGAAGAATGTCTACGCCATCGGTGCTGgtaagaatattt---taaatacgttctgtttgttttccaaaatattaactatctttataacagtaaaaataattaactaatcctacta-acaaacgaatggagt
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G090747_T02 (Zea mays), 5'ss of exon 3
AAGTTTTTAAGACAGCCTCATTTTATAGTGTGGGATAATGGTGACCTTATAACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaagacagtttcccttagtgaattaggacttgggcattaaataacac---acagtgatatattattgtacgatatgataaatccctttatatatatacgtgt
|||||||| || |||||||||||||| ||||||||||| |||| || || || |||||||| |||||||| ||||| |||| |||||| ||||| |||||||| || | | | | | || | || |||| | || | |||| || || || || | || | ||
AAGTTTTTGAGGCAGCCTCATTTTATTGTGTGGGATAACAGTGATCTCATCACTCATGAAGTCATGGGTGGCTTAAAAAATGTCTATGCTATTGGTGCTGgtaatttctatttgtctttttcactgtttcctgttttcttgattacactggagagctacatatatcattatattaagaataaaaagatgggctagaaacc---
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G01380.1 (Glycine max), 5'ss of exon 2
AAGTTTTTAAGACAGCCTCATTTTATAGTGTGGGATAATGGTGACCTTATAACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaaga--cagtttcccttagtgaattaggacttgggcatta--aataacacacagtgatatattattgtacgatatgataaatccctttatatatatacgtgt
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AAATTTTTGAGGCAGCCCCACTTTATAGTGTGGGATAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGATTAAAGAATGTATATGCTATTGGAGCAGgtaaaaactagtttatgtggttacattgtagagaacaacttagtagaagcaaataggtacatacagttttttttttcaaaaaaaa--tttagagtttagtgt--
upper sequence: Vv13s0158g00340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G20840.1 (Glycine max), 5'ss of exon 2
AAGTTTTTAAGACAGCCTCATTTTATAGTGTGGGATAATGGTGACCTTATAACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaagacagtttcccttagtgaattaggac-ttgggcattaaataacacacagtgatatattattgtacg-atatgataaatccctttatatatatacg-tgt
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AAGTTTTTGAGGCAACCTCACTTTATAGTGTGGGATAATGGTGATCTTGTTACTCATGAAATCATGGGTGGATTAAAGAATGTATATGCTATTGGAGCAGgtaatt---tctccattttcctcttacattgctatacattgtaaagaataacttcatagaagctagtaggcaaatgctattttaagcaggaaatacataatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33403903|gb|CF209530.1|CF209530EST: AACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTG GAATGGTAGCAGCTCTAACCAATGAGAGTGCCACCAGCAAATCAGTGTACT
genomic: AACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaagacagt ... tgcataacagGAATGGTAGCAGCTCTAACCAATGAGAGTGCCACCAGCAAATCAGTGTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGTTTTTAAGACAGCCTCATTTTATAGTGTGGGATAATGGTGACCTTATAACCCATGAAGTTATGGGTGGTTTAAAGAATGCCTATGCCATTGGAGCTGgtaagacagtttcccttagtgaattaggacttgggcattaaataacacacagtgatatattattgtacgatatgataaatccctttatatatatacgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataaa