Sequence
atgc intronic sequence ATGC exonic sequenceTTCAAGATGGTGGTGCTTCCAGTATTAGGTCAGCTTGCAGATGAGTATGGCCGGAAACCACTGCTAATGGTCACTGTATCCACATCTATATTCCCTTTTGgtatattttttctgaatatctacattttgcacaataattctgcgtatgtgttttgagtaaacaccagaggtttccctaaagccagatattttatgcaatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0106g00610.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G32810.1 (Glycine max), 5'ss of exon 5
TTCAAGATGGTGGTGCTTCCAGTATTAGGTCAGCTTGCAGATGAGTATGGCCGGAAACCACTGCTAATGGTCACTGTATCCACATCTATATTCCCTTTTGgtatatttttt----ctgaatatctacattttgcacaataattctgcgtatgtgt---tttgagtaaacac-cagaggtttccctaaagccagatattt-tatgcaatg---------------------------------------------------------------------------------------
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TTCAAGATGGTGGTACTTCCACTACTGGGTCAGCTTTCAGATGAGTATGGCCGTAAACCCTTGCTCCTGATTACCATATCCACGGCCATATTTCCCTTCGgtatgctcgttgacatcaaatgcatataagacatgtgaaaatttacaatctcagtatctctgactaaactcacagcaaaacctataaatttcgttgttaatactccttttattttattctgctgtgctttcaatttccttttgtagtttgttcataaaattgataccaaattgaactgaagattcatttattacag
upper sequence: Vv13s0106g00610.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G34820.1 (Glycine max), 5'ss of exon 2
TTCAAGATGGTGGTGCTTCCAGTATTAGGTCAGCTTGCAGATGAGTATGGCCGGAAACCACTGCTAATGGTCACTGTATCCACATCTATATTCCCTTTTGgtatatttttt----ctgaatatctaca---ttttgcacaataattctgcgtatgtgt-tttgagtaaacac-cagaggtttccctaaagccagatattttatgcaatg
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TTCAAGATGGTGGTACTTCCACTACTGGGTCAGCTCTCAGATGAGTATGGCCGTAAACCCTTGCTCCTGATTACCATATCCACGGCTATATTTCCCTTTGgtatgctcgttgacatcaaatgcatataagaacttgtaaaaatttaccacctcagtatctctgactaaaatcacagcaaaacctttaaatttcgttgtta---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715805|gb|FC065160.1|FC065160EST: CCGGAAACCACTGCTAATGGTCACTGTATCCACATCTATATTCCCTTTTG CTGTACTTGCTTGGAATAAGTCAAAAGGATTTGTATATGCTTATTATGTGC
genomic: CCGGAAACCACTGCTAATGGTCACTGTATCCACATCTATATTCCCTTTTGgtatattttt ... cctgtttcagCTGTACTTGCTTGGAATAAGTCAAAAGGATTTGTATATGCTTATTATGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCAAGATGGTGGTGCTTCCAGTATTAGGTCAGCTTGCAGATGAGTATGGCCGGAAACCACTGCTAATGGTCACTGTATCCACATCTATATTCCCTTTTGgtatattttttctgaatatctacattttgcacaataattctgcgtatgtgttttgagtaaacaccagaggtttccctaaagccagatattttatgcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtaaa