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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctccttttttttttttccttttctttttcatgcattattgcaaatatgcagacacatcaatcaagctcttgtgtagatattcaatctgatcaaagcaagtttgtttggattgatag

Basic information

species Vitis vinifera
transcript Vv13s0084g00090.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G25890.1 (Glycine max), 5'ss of exon 2
GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctccttttttttttttccttttctttttcatgcattattgcaaatatgcagacacatcaatcaagctcttgtgtagatattcaatctgatcaaagcaagtttgtttggattgatag
||| |  ||||| |||||||||||||  |||||||||||||| ||| |  | |||||||||||||||||||||    ||  |   |  |  |   |  ||  | ||| |  |||||    |   || ||          ||| | ||||| ||| ||||        ||| | ||  |   | ||
GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATCCTAGCTCTTCTTGGgttagtctccaagcttaatgcac--taacaagtctatatagtatggtgaatatatgaaagtatgaaa---------gtgcatatatt-aatatgattgtt-tgtgttggattataa-aacag

upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G36200.1 (Glycine max), 5'ss of exon 2
GAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctccttttttttttttccttttctttttcatgcattattgcaaatatgcagacacatcaatcaagctcttgtgtagatattcaatctgatcaaagcaagtttgt-ttggattgatag-----
||| |  ||||| |||||||||||||  |||||||||||||| ||| || | ||||||||||||||||| |||   |||  |   |  |  |  ||  ||  |  |  ||||    |   | | || ||  | |    ||  || ||    ||| |||| |     | ||||| ||||||| |||      
GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCTTGCTCTTCTTGGgttagtttccaagtttaatgcac--taacaattctatatagcaccgcaag---gtgaatatatgaagtatgaaaatgcatatat---taatatgatta---ttaatttgtgttggattaataaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720884|gb|EE097197.1|EE097197
EST:     AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG                         GCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
genomic: AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctcc ... ggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
EST: gi|161708030|gb|FC056079.1|FC056079
EST:     AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG                         GCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
genomic: AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctcc ... ggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
EST: gi|161720490|gb|FC070602.1|FC070602
EST:     AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG                         GCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
genomic: AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctcc ... ggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
EST: gi|28969851|gb|CB348884.1|CB348884
EST:     AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG                         GCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
genomic: AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctcc ... ggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
EST: gi|161705929|gb|FC054823.1|FC054823
EST:     AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG                         GCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
genomic: AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctcc ... ggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
EST: gi|161716308|gb|FC065874.1|FC065874
EST:     AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG                         GCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
genomic: AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctcc ... ggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
EST: gi|161720390|gb|FC069845.1|FC069845
EST:     AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG                         GCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
genomic: AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctcc ... ggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
EST: gi|352791162|gb|FQ477489.1|FQ477489
EST:     AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG                         GCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC
genomic: AAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGGgttagtctcc ... ggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCC