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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGAGGGTTGATGGAGCAGGATTTGAGCAAGCTGGATGTGACAACACTACATCCGCTCTCGCCCGAAGTTATTTCTCGTCAGGCTACTATAAATATTGgtaattagcttgcagaatgcgtgaactaccttaacacagattagtcatcactcatcatacttactttaaggatatatatttccaatatctaggtggtggtgagctggcaatcctaatctttgattgaagctcataatttcggttgattttatcttttcag

Basic information

species Vitis vinifera
transcript Vv13s0074g00310.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 1
CGAAGAGGGTTGATGGAGCAGGATTTGAGCAAGCTGGATGTGACAACACTACATCCGCTCTCGCCCGAAGTTATTTCTCGTCAGGCTACTATAAATATTGgtaattagcttgcagaatgcg-tgaactaccttaacacagattagtcatcactcat-catac-ttactttaaggatatatatttccaatatctag-gtggtggtg-agctggcaatcctaatctttgattgaagctcataatttcggttgattttatcttttcag
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AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgattaggggattccgatgtagggttcgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgtt----gttgatg-ttgtggtggaatag----------