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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGAACTCTGTCGCTTCAGTGGTGCAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgtggatttaattacatattttcaagtctcatatgaatatttaatttgcttgattgcctatcaaaaaatatttaatttccttgatttatttagagagcagtgttggggttgttattgtgctttttatattctgaatgtccattaatatttatataatctcgtaattgatcaattgttag

Basic information

species Vitis vinifera
transcript Vv13s0074g00140.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37188150|gb|CF607501.1|CF607501
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|22011818|gb|BQ796852.1|BQ796852
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|71868597|gb|DT017652.1|DT017652
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|77581842|gb|DV219879.1|DV219879
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|71873024|gb|DT022079.1|DT022079
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|110384865|gb|EC949331.1|EC949331
EST:     CTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|71866495|gb|DT015550.1|DT015550
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|30136747|gb|CB922085.1|CB922085
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|110359284|gb|EC920528.1|EC920528
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
EST: gi|110363994|gb|EC927631.1|EC927631
EST:     CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAG                         GTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT
genomic: CAAAGATATACCCTGGTAAAGGTATCAGATTTGTTAGATCTGATTCACAGgtaaaaatgt ... caattgttagGTATTTCTATTTGCCAATTCAAAATGCAAGAGATACTTTCACAACCGACTT