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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAGgtctgctttctgtatataagacacattcttagacttgcttggattttgatattcttacactacttcacctgattgttttaatcctaaaatag

Basic information

species Vitis vinifera
transcript Vv13s0074g00040.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G33150.1 (Glycine max), 5'ss of exon 2
AGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAGgtctgctttctgt------------------atataagacacattcttagact----tgcttggatt-ttgatattcttacactacttcacctgattgttttaatc-ctaaaatag
 || |||||||||| ||||| |||||||||||||| ||||||||  ||||||||||| |||||||||||| | |  | | |                  |||  ||  |  |   |  |||    ||| | ||||  || |  |  | || |  || |     ||| | ||||  |||  ||||
GGTCTGAGCAGAAAGCTGGTTCATATATTGTCTGGCTTGCTTTTTCTGGTTTCTTGGCCAATTTTCAGgtatcccatttcttcaattttttaatctttcatacgaggaaggtgtgtgaactgcaatgcattgattgctgctgctgctgcattctttgaatgttttgatctaattgctaggatag

upper sequence: Vv13s0074g00040.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G34420.1 (Glycine max), 5'ss of exon 2
AGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAGgt---ctgctttctgt---atataagacacattcttagacttgcttggatt--ttgatattcttac-actacttcacctgattgttttaatcctaaaa-tag-----
 || |||||||||| |||||||||||||| ||||| ||||||||  ||||||||||| | ||||||||||   |   ||| |||   |||  ||  |  |   |  |||    || |||  ||| |  |  | |  || |||    ||| |||||| ||  |||   |||     
GGTCTGAGCAGAAAGCTGGTCCATATATTATCTGGCTTGCTTTTTCTGGTTTCTTGGCCTATTTTCAGgtaccccattttatgtttcatacgaggaaggtgtgtgaactgcaatgcattgattgctgctgctgctgctgctttgtttgaatgttttgatgttaatgctaggatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827139|gb|FQ421412.1|FQ421412
EST:     GTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAG                         CACCTCAACAGAGGCTCGCTACTTTGCTTCTTTGGTTCCTGTTGTCAATTG
genomic: GTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAGgtctgctttc ... cctaaaatagCACCTCAACAGAGGCTCGCTACTTTGCTTCTTTGGTTCCTGTTGTCAATTG
EST: gi|351029624|gb|FQ427464.1|FQ427464
EST:     GTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAG                         CACCTCAACAGAGGCTCGCTACTTTGCTTCTTTGGTTCCTGTTGTCAATTG
genomic: GTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAGgtctgctttc ... cctaaaatagCACCTCAACAGAGGCTCGCTACTTTGCTTCTTTGGTTCCTGTTGTCAATTG
EST: gi|161713295|gb|FC064025.1|FC064025
EST:     GTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAG                         CACCTCAACAGAGGCTCGCTACTTTGCTTCTTTGGTTCCTGTTGTCAATTG
genomic: GTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAGgtctgctttc ... cctaaaatagCACCTCAACAGAGGCTCGCTACTTTGCTTCTTTGGTTCCTGTTGTCAATTG