1 5' 3' | 2 5' 3' |
ATCCGGATGCCTTGGGGATTCACTCCGTTTCCATGAGGCCCAAGCTCCAGTCTTCTGGCTTTCTTGTGCTACCCTCCCAATACAATGGTCCAGTGTTTCAgtaagtctcgttattttctctcttaaatgattctgaatatcttcagtgaagaatggtgcatggaaagatggctgcaggtctttagtagaatctgaataga...
species | Vitis vinifera |
transcript | Vv13s0073g00620.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTTCTGGCTTTCTTGTGCTACCCTCCCAATACAATGGTCCAGTGTTTCA AGATCTCAATGAGAGGATGAGAGATGCACTTCACAGTTACATAGAAGAGCGEST: gi|110407570|gb|EC973172.1|EC973172
genomic: TCTTCTGGCTTTCTTGTGCTACCCTCCCAATACAATGGTCCAGTGTTTCAgtaagtctcg ... atttgcagagA--TCTCAATGAGAGGATGAGAGATGCACTTCACAGTTACATAGAAGAGCG
EST: TCTTCTGGCTTTCTTGTGCTACCCTCCCAATACAATGGTCCAGTGTTTCA AGATCTCAATGAGAGGATGAGAGATGCACTTCACAGTTACATAGAAGAGCGEST: gi|110373060|gb|EC937267.1|EC937267
genomic: TCTTCTGGCTTTCTTGTGCTACCCTCCCAATACAATGGTCCAGTGTTTCAgtaagtctcg ... atttgcagagA--TCTCAATGAGAGGATGAGAGATGCACTTCACAGTTACATAGAAGAGCG
EST: TCTTCTGGCTTTCTTGTGCTACCCTCCCAATACAATGGTCCAGTGTTTCA AGATCTCAATGAGAGGATGAGAGATGCACTTCACAGTTACATAGAAGAGCG
genomic: TCTTCTGGCTTTCTTGTGCTACCCTCCCAATACAATGGTCCAGTGTTTCAgtaagtctcg ... atttgcagagA--TCTCAATGAGAGGATGAGAGATGCACTTCACAGTTACATAGAAGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCGGATGCCTTGGGGATTCACTCCGTTTCCATGAGGCCCAAGCTCCAGTCTTCTGGCTTTCTTGTGCTACCCTCCCAATACAATGGTCCAGTGTTTCAgtaagtctcgttattttctctcttaaatgattctgaatatcttcagtgaagaatggtgcatggaaagatggctgcaggtctttagtagaatctgaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaga