1 5' 3' | 2 5' 3' |
AAAATTCTGAAACATGGACTGCGGTCTCCTCCACTATAGAAGATGGCCATGCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAGgtatataaagaaatcaaacctctgatttcaatctcaaatcatcttaaacaagaaaaagtactgaaattcatgtatcttaaacaagaaaaagtactgaaat...
species | Vitis vinifera |
transcript | Vv13s0067g03140.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAG GAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAAEST: gi|349809970|gb|FQ398595.1|FQ398595
genomic: GCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAGgtatataaag ... attcacacagGAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAA
EST: GCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAG GAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAA
genomic: GCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAGgtatataaag ... attcacacagGAGCTACTACAGATGCACGAGGAAGCATGAGCAAAGCTGCCGAGCTACGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATTCTGAAACATGGACTGCGGTCTCCTCCACTATAGAAGATGGCCATGCATGGAGGAAATATGGGCAAAAGGAGATCCTCAATGCAAAATTCCCAAGgtatataaagaaatcaaacctctgatttcaatctcaaatcatcttaaacaagaaaaagtactgaaattcatgtatcttaaacaagaaaaagtactgaaat
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa