Sequence
atgc intronic sequence ATGC exonic sequenceGATGATGGGTCTCCCGTGTCTATATTTTCTCTTTCAGGAAGTAATGCTCAGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACAgtaagctaccaatgattattactttggctatattagatacaaatgagtttttttcctttgcaattttgcctttgtgatatattctatggatttttaattc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 5'ss of exon 2
GATGATGGGTCTCCCGTGTCTATATTTTCTCTTTCAGGAAGTAATGCTCAGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACAgtaagctaccaatgattattactttggctatattagatacaaatgagtttttttcctttgcaattttgcct--ttgtgatatattctatggatttttaattc-
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GATGATGGGTCGCCCGTGTCAATCTTTTCTCTGTCAGGGAGCAATCCTCAGGACAGGCACTTGGTTGCTGGTCGGAATGGTGTTAAGAGATTACGAACAgtaagttactaatgttgatc---ttaaatatttgtaatgtctacttgtactgcaagtgtcttattttaacagatgagaatggagtctatggtgatatactatt
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 2
GATGATGGGTCTCCCGTGTCTATATTTTCTCTTTCAGGAAGTAATGCTCAGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACAgtaagctaccaatgattattactttggctatattagatacaaatgagtttttttcctttgcaattttgcctttgtgatatattctatggatttttaattc
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GACGATGGTTCTCCGGTGTCCATATTTTCTCTGTCTGGGAGCAATTCTCAGGATGGACATTTAGCTGCGGGGCGTAATGGCGTTAAGCGTCTTCGCACTgtaagct-----------tagcttgtcttatgtt-gctgcggatgtttcaatatttttggatgattttccactgttg---atggtgcaatttttcag---
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G47590.1 (Glycine max), 5'ss of exon 2
GATGATGGGTCTCCCGTGTCTATATTTTCTCTTTCAGGAAGTAATGCTCAGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACAgtaagcta----ccaatgattattactttggctat--attagatacaaatgagtttttttcctttgcaattttgcctttgtgatatattctatggatttttaattc------
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GATGACGGTTCTCCTGTCTCGGTGTTCTCACTCTCCGGCTCCAATGCTCAGGATGGTCACTTAGCTGCTGCACGCAATGGTGTCAAGCGTCTTCGAACTgtgtgttactttcctattcttgattttcagattatctatttattttggtttggatttgtattttgtggattgtgttgtattgat-tgtgctgtggtgttactgttttttcag
upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 5'ss of exon 2
GATGATGGGTCTCCCGTGTCTATATTTTCTCTTTCAGGAAGTAATGCTCAGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACAgtaagctaccaatgatt-attactttggctatattagatacaaatgagtttttttcctttgcaattttgcctttgtgatatat-tctatggatttttaattc-
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GATGATGGATCTCCAGTTTCAATATTTGCTCTCTCTGGGAACAATGCTCAAGATGGGCATTTGGCTGCTGGACGAAATGGTGTCAAGCGCCTTCGTACCgtaagttctcattaatttatcacatggtttaggctcgattcatacaaacgagattcttttt---tctgattactgacataaacgtctattgagtactaagttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688567|gb|EC921023.1|EC921023EST: AGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACA GTCAGGCATCCAAATATTTTATCATTTCTGCACAGTACTGAGGCTGAGACT
genomic: AGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACAgtaagctacc ... tccttttcagGTCAGGCATCCAAATATTTTATCATTTCTGCACAGTACTGAGGCTGAGACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGATGGGTCTCCCGTGTCTATATTTTCTCTTTCAGGAAGTAATGCTCAGGATGGACATTTAGCTGCTGGCCGTAATGGTGTCAAGCGTCTTCGCACAgtaagctaccaatgattattactttggctatattagatacaaatgagtttttttcctttgcaattttgcctttgtgatatattctatggatttttaattc
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacaa