1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAATCTGCAGCAGGACAAGGATGTTGAGTATTGGGAGGTTGACTTACCATCTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaatctcctttttttttcactaatcattaaataaacaacatcaattcaaaactgaatcagaggagatatctaattcttttgaacaatattttct...
species | Vitis vinifera |
transcript | Vv13s0067g02510.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCG GCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTEST: gi|110727344|gb|EE103999.1|EE103999
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCG GCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTEST: gi|26257091|gb|CA808154.1|CA808154
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCA GCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTEST: gi|71865240|gb|DT014295.1|DT014295
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCG GCAAGAGATTTTGATCCAGATTCCTTAAGGAGTGGAGTACCTAAAGCAGTTEST: gi|26262233|gb|CA813296.1|CA813296
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCA GCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTEST: gi|33405280|gb|CF210907.1|CF210907
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCA GCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTEST: gi|26262362|gb|CA813425.1|CA813425
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCA GCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTEST: gi|77578137|gb|DV217839.1|DV217839
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCA GCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTEST: gi|71858068|gb|DT007123.1|DT007123
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
EST: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCA GCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
genomic: CTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaat ... atattggtagGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCTGCAGCAGGACAAGGATGTTGAGTATTGGGAGGTTGACTTACCATCTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAgtaagagaatctcctttttttttcactaatcattaaataaacaacatcaattcaaaactgaatcagaggagatatctaattcttttgaacaatattttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata