1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCGATGAGCCAGTGGTTGAAGAAGAGGACGATGATGATGATGAGGATGACGAAGATGACAAGGATGAAGATGATGTTGAAGgttagctaatatagtgcactagaatgctcggtgataattattcatgtgctagtccttggagtgcttttgctttgatttttgttttcgttagagctttcaa...
species | Vitis vinifera |
transcript | Vv13s0067g00710.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGATGAAGATGATGTTGAAG GAGAACAGGGAGGAGATGCTAGTGGTAGGTCAAAGCAGAGCCGTAGTGAAAEST: gi|30253437|gb|CB970988.1|CB970988
genomic: GGATGAAGATGATGTTGAAGgttagctaat ... tgttaagcagGAGAACAGGGAGGAGATGCTAGTGGTAGGTCAAAGCAGAGCCGTAGTGAAA
EST: CGAAGGTGACAAGGATGAAGATGATGTTGAAG GAGAACAGGGAGGAGATGCTAGTGGTAGGTCAAAGCAGAGCCGTAGTGAAAEST: gi|30302985|gb|CB979779.1|CB979779
genomic: CGAAGATGACAAGGATGAAGATGATGTTGAAGgttagctaat ... tgttaagcagGAGAACAGGGAGGAGATGCTAGTGGTAGGTCAAAGCAGAGCCGTAGTGAAA
EST: TGATGATGATGAGGATGACGAAGATGANANTCATGAAGATGATGTTGAAG GAGAACAGGGAGGAGATGCTAGTGGTAGGTCAAAGCAGAGCCGTAGTGAAA
genomic: TGATGATGATGAGGATGACGAAGATGACAAGGATGAAGATGATGTTGAAGgttagctaat ... tgttaagcagGAGAACAGGGAGGAGATGCTAGTGGTAGGTCAAAGCAGAGCCGTAGTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGATGAGCCAGTGGTTGAAGAAGAGGACGATGATGATGATGAGGATGACGAAGATGACAAGGATGAAGATGATGTTGAAGgttagctaatatagtgcactagaatgctcggtgataattattcatgtgctagtccttggagtgcttttgctttgatttttgttttcgttagagctttcaa
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG