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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctatacatctctctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag

Basic information

species Vitis vinifera
transcript Vv13s0067g00220.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g44630.2 (Oryza sativa), 5'ss of exon 3
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagc--tatacatctctctgtctttctctttctcagactctcacgatcacccactcaatc-actcactttgtcatcaagttaattaatt-attgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag
 || || ||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||| |||||| | || || || ||||| || || ||||||||     | |  || | ||   |    | | | | | |       |           || | | | ||   ||    | ||| ||||| ||  ||                                         
TGACGGTCTTGGTGCTGAGATTGTTGGCACCTTCATCCTGGTCTACACCGTCTTCTCAGCCACTGATGCCAAGAGGAATGCCAGGGACTCACATGTTCCTgtaagtatccttctcctttttgcagtgtgatatgtgaaagttcagtagtagttagtgtggtctaatgagttatgcactgtgataactaattcatcaccaa---------------------------------------

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os04g47220.1 (Oryza sativa), 5'ss of exon 1
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctatacatctctctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag
 || || || || || ||||| || ||||||||| |||| |||||||| |||||||||||||| ||||||||| | ||||| || ||||||||||| || || || |||||          ||    ||     | |   |||         |   ||  | |     |||  ||    | ||| ||| |||  ||  |  | | |  |  |  |                    
CGACGGCCTCGGCGCCGAGATCGTCGGCACCTTCATCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCACGTTCCGgttag-tatac-------caactactactgcagtaaagattcagag------atggaagtatttttactgttttctgagtgattgatttttgttttaatttgcgcga-tcttccacag-----------------

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AC209208.3_FGT002 (Zea mays), 5'ss of exon 2
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaag--ctatacatctctctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaatt--attgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag
 ||||| ||||| ||||||||||||||||||||| |||| |||||||| |||||||| ||||| || |||||| | || || || |||||||| || ||||||||  || | |  ||  |  | |     ||| |     | | |   |    |    | |   |    ||  ||   |  ||  |||||  ||   |||                                       
TGATGGCCTTGGCGCTGAGATTGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCAGCCACCGATGCCAAGAGGAATGCCAGGGACTCCCATGTTCCTgtaagtactcttccacttcccttttcctagtttgttcagttgttatagttctgcttggattagtttggcttagcacacatatatgtaattgaatcaactt---------------------------------------

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G392975_T03 (Zea mays), 5'ss of exon 2
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaag--ctatacatctctctgtctttctc-tttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag
 || || ||||| || ||||| |||||||||||| |||| |||||||| |||||||| ||||| || |||||| | ||||| || |||||||| ||||| |||||  || | | ||  |  || || ||  ||| |    || | | | |   |  ||  |   | || ||    ||| |   |||  |  ||  |  ||||                                    
GGACGGCCTTGGCGCAGAGATCGTTGGCACCTTCATCCTAGTCTACACCGTCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactcttcgtcctttcgttttcctagtttgttcagctgttagggtt--ctgcttgaattcacatttgcatatctaa--aatataagatgacggttgtaa----------------------------------

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G174807_T01 (Zea mays), 5'ss of exon 2
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctatacatct-ctctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag
 || || || || || ||||| || ||||||||| |||| |||||||| |||||||||||||| ||||||||| | ||||| || |||||||| || || || ||      |||  |  || ||| ||  || |  | |||    |  |  ||   |||   |||   || ||     |||  ||  |    |  |     |                                  
CGACGGCCTAGGCGCCGAGATCGTCGGCACCTTCATCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCATGTGCCGgtgagtacagtatcagccttgccttcctgcttattcgcctc----gtccgtccgtgcaa--gctcgacttatcgatg-gtttctttgtggacgaatgaacag----------------------------------

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S102_107V6.1 (Physcomitrella patens), 5'ss of exon 2
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctatacatctctctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaatt----attgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag-------------------------------------
||||||  | || || |||||||| || || |||||  | ||||||||||| ||||||||||| ||||||||||| | |||| | ||||| || || || ||| | |  || | |    |    |   ||||    | |     ||              |     ||| |||   | ||||| |  |    |||||   || ||  |      |   || |   | ||  |   |||                                      
AGATGGATTGGGAGCAGAGATTGTGGGAACGTTCGTGTTGGTCTACACTGTGTTCTCCGCCACCGACGCCAAGCGCAGCGCTCGTGACTCTCATGTGCCGgtatgtttcacttattcacggtggtacatttc---aattacagggaaagttggagggtggatgtgttttatcactgatttaatcagatctgaattgctgctgacgacgacataaaaaaataaaaataaaaataaaaaaaactgaaacaaaaaaaataaaaactcttcgtcttgcag

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S1_535V6.2 (Physcomitrella patens), 5'ss of exon 2
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctatacatctctctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgccttt-gtcggtgt--gggtgatgtattattttgaatgtgttaaag
 |||||  | || |||||||| || ||||| ||||| || || |||||||| ||||||||||| || |||||||| || ||  | ||||| || || || || ||   ||||   ||| || |         |     |||   ||| |||    |    ||   ||   | |||   ||   || |  |  |  || |  ||| |     |||||   |    || |  ||      
CGATGGCTTGGGCGCTGAGATCGTGGGCACGTTCGTGCTGGTGTACACTGTGTTCTCCGCCACCGATGCCAAGCGCAATGCCCGTGACTCTCATGTGCCGgtgag---taca---ctccgtttccggtgcagttcagttcta--gattaccgcgcctgagacgtgctggctgatc---tttggtactcctcacagttagatggtctcaaaatgatgctcttcgatggacttgcag---

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 2
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctatacatctc--tctgtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag------------------------------------------------------------
|||||| ||||| |||||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||| | |  || ||||||||||| ||||| ||| | |     |  |   |     ||   ||  |    |||||| ||       ||   |   ||   || || ||  ||    |  |  | |  ||| | | |||   |  | |  | || |   | | |                                                                 
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACGGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttcttcttccatccaaagctttggttgattcccctctcatgaagttttgctt--ttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

upper sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 2
AGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctatacatctctct----gtctttctctttctcagactctcacgatcacccactcaatcactcactttgtcatcaagttaattaattattgcctttgtcggtgtgggtgatgtattattttgaatgtgttaaag------------------------------------------------------------
|||||| ||||| |||||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||| | |  || ||||||||||| ||||| ||| | |   | |  |       |  ||  |   |  |   |||||| ||      |||   |   ||   || || ||  ||    |  |  | |  ||| | | |||   |  | |  | || |   | | |                                                                 
AGATGGTCTTGGAGCTGAGATTGTTGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACTGATGCCAAGAGAAGTGCCAGAGACTCCCATGTCCCGgtacgtttctccttccatccaaagctttggttgattcccccctctcatgaagttttactt--ttcttcttcttatcttcttgtgtggttttcctagtttttcttgctgtacttcctcttatcttctccttatctcttctcctcctcatggatagatttaagatatgttccaagctcacaaactttggcgatttctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351019993|gb|FQ439810.1|FQ439810
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGGTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161712606|gb|FC062208.1|FC062208
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCA-TCGGGTTCGCAGTGTTCT
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCT
EST: gi|161713281|gb|FC063083.1|FC063083
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGC-AATCGGGTTCGCAGTGT-CTTGGT
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGT
EST: gi|110689996|gb|EE066710.1|EE066710
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161714519|gb|FC062969.1|FC062969
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTG-CC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161713584|gb|FC063407.1|FC063407
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAA
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAA
EST: gi|161716221|gb|FC069499.1|FC069499
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCCATCGGGTTCGCAGTGTTCT
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCT
EST: gi|33409723|gb|CF215350.1|CF215350
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161720336|gb|FC071189.1|FC071189
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161719835|gb|FC065771.1|FC065771
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|33409719|gb|CF215346.1|CF215346
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161713560|gb|FC062505.1|FC062505
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGC
EST: gi|161719932|gb|FC066129.1|FC066129
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCA
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCA
EST: gi|161713874|gb|FC062564.1|FC062564
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161715641|gb|FC067783.1|FC067783
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACT
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACT
EST: gi|33409074|gb|CF214701.1|CF214701
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161717612|gb|FC065625.1|FC065625
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|161712029|gb|FC060045.1|FC060045
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
EST: gi|110732652|gb|EE108136.1|EE108136
EST:     TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCT                         ATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC
genomic: TCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTgtaagctata ... tgtgttaaagATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCC