Sequence
atgc intronic sequence ATGC exonic sequenceGAGGAGATACATGAATTACTTCTGAGTTTTGCTGAAGCTGGAGCTACAGTTGTGAGACTTAAAGGAGGGGATCCACTGgtgagtttctattgcaaaacgtgaaaaagatgagtatggcattgcaagttgtttcacggaatcatctcagaaatgttgtgtttagtgttttttattgaactttttttcaaatattttctgggtgtattag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0064g01470.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G42510.1 (Glycine max), 5'ss of exon 3
GAGGAGATACATGAATTACTTCTGAGTTTTGCTGAAGCTGGAGCTACAGTTGTGAGACTTAAAGGAGGGGATCCACTGgtgagtttctattgcaaaacgtgaaaaagatga--gtatggcattgcaagttgtttcacggaatcatctcagaaatgttgtgtttagtgttttttattgaactttttttcaaatattttctgggtgtattag
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GAGGAGATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTGgtgagtttttgtttgggattg-gtatagtgtgattgtattggttaaccaatt-tagtatgttagtttgtcctggcttgtgtgatgaacggatgtagat--atcttatggtgcttcttgtttggtatttgtag
upper sequence: Vv13s0064g01470.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G16030.1 (Glycine max), 5'ss of exon 3
GAGGAGATACATGAATTACTTCTGAGTTTTGCTGAAGCTGGAGCTACAGTTGTGAGACTTAAAGGAGGGGATCCACTGgtgagtttctattgcaaa-acgtgaaaaagatgagtatggcattgcaagttgtttcacggaatcatctcagaaatgttgtgtttag-tgtt----ttttattgaactttttttcaaatattttctgggtgtattag
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GAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTGgtgagttttcgttgggattgttttagtgtgattgtgttggtggagcaatttgtatgttagtttgtcgtggcttgtgtgatgaatagatgtagacgtcttatggcgcttcttgtttggtatttgtag----------
upper sequence: Vv13s0064g01470.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G40850.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGGAGATACATGAATTACTTCTGAGTTTTGCTGAAGCTGGAGCTACAGTTGTGAGACTTAAAGGAGGGGATCCACTGgtgagtttctattgcaaaacgtgaaaaagatgagtatggcattgcaagttgtttcacggaatcatctcagaaatgttgtgtttagtgttttttattgaactttttttcaaatattttctgggtgtattag
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GAAGAGATTCATGAACTACTCCTAAATTTTGCTGAAGCTGGTGCCACTGTTGTCAGGCTTAAAGGTGGAGATCCTCTGgtaagcttatatc------------------------------------tgcttctcatactcttcctaa-----tttcgtatatggctcctgtttaaatgtgtttgcaactattt---ggatatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110362799|gb|EC926354.1|EC926354EST: ACAGTTGTGAGACTTAAAGGAGGGGATCCACTG GTATTTGGGAGAGGTGGAGAGGAGATGGACTTTTTGCAAAAGCAGGGGATT
genomic: ACAGTTGTGAGACTTAAAGGAGGGGATCCACTGgtgagtttct ... ggtgtattagGTATTTGGGAGAGGTGGAGAGGAGATGGACTTTTTGCAAAAGCAGGGGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGAGATACATGAATTACTTCTGAGTTTTGCTGAAGCTGGAGCTACAGTTGTGAGACTTAAAGGAGGGGATCCACTGgtgagtttctattgcaaaacgtgaaaaagatgagtatggcattgcaagttgtttcacggaatcatctcagaaatgttgtgtttagtgttttttattgaactttttttcaaatattttctgggtgtattag
- - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG