Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTCAAACTTTTAAGCTGGGTCCTCTCAGCTGTATGATATGCCAAGCGCTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAAgtaggcagacaaaggcaacttgaacctttaagtttgttttgtgtggattattcttatcattttgcagtttttactaatattacctacatttttaatctgaaaattag

Basic information

species Vitis vinifera
transcript Vv13s0047g00170.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0047g00170.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G47010.1 (Glycine max), 5'ss of exon 2
ATTCTCAAACTTTTAAGCTGGGTCCTCTCAGCTGTATGATATGCCAAGCGCTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAAgtaggcagacaaaggcaacttgaacctttaagtttgttttgtgtggattattcttatcattttgcagtttttactaatattacctacatttttaatctgaaaattag
|||| ||  | |||||| | |||||||| ||||||| | | |||||||| ||| | ||||| | ||||||||||||||||||||| ||||| |  |||||||| | |            || |    || | | | |  ||  | || || |||    |||||    |  || || |||||  |||| | | | |  | |       
ATTCGCATTCGTTTAAGATTGGTCCTCTTAGCTGTACGGTGTGCCAAGCACTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAAgtatgtattgtgtactgtgtttatttcttgaatctttgatgcattgaatactct----atttttagctcatttctcatatt--ctacctgtctgaaattag------

upper sequence: Vv13s0047g00170.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G15130.1 (Glycine max), 5'ss of exon 2
ATTCTCAAACTTTTAAGCTGGGTCCTCTCAGCTGTATGATATGCCAAGCGCTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAAgtaggcagacaaaggcaacttgaacctttaagtttgttttgtgtggattattcttatcattttgcagtttttactaatattacctacatttttaatctgaaaattag
|||| ||  | |||||| | |||||||| ||||||| | | |||||||| ||| | ||||| | |||||||||||| |||||||| ||||| |  |||||||| | |            |    ||  |   | | | |||  |  || || | |  |||  |  | ||||   | || |  | ||   |  |  ||||||| ||||
ATTCACAGTCGTTTAAGATTGGTCCTCTTAGCTGTACGGTGTGCCAAGCACTTTTATTTGACACCAGCAAATGTGTACCTTGTTCTCATGTTTTCTGCAAgtatgta-----------ttacgtcccatgcttatttcttgaatatatgatgcattgcatactatatttttagttcatttctcataatctacttgtctgaaa-ttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351047067|gb|FQ454677.1|FQ454677
EST:     CTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAA                         GGCATGTATATCACGTTTTAAAGATTGCCCATTATGTGGAGCTGACATTGA
genomic: CTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAAgtaggcagac ... tgaaaattagGGCATGTATATCACGTTTTAAAGATTGCCCATTATGTGGAGCTGACATTGA
EST: gi|351038304|gb|FQ460996.1|FQ460996
EST:     CTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAA                         GGCATGTATATCACGTTTTAAAGATTGCCCATTATGTGGAGCCGACATTGA
genomic: CTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAAgtaggcagac ... tgaaaattagGGCATGTATATCACGTTTTAAAGATTGCCCATTATGTGGAGCTGACATTGA
EST: gi|351055326|gb|FQ441924.1|FQ441924
EST:     CCTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAA                         GGCATGTATATCACGTTTTAAAGATTGCCCATTATGTGGAGCTGACATTGA
genomic: CTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAAgtaggcagac ... tgaaaattagGGCATGTATATCACGTTTTAAAGATTGCCCATTATGTGGAGCTGACATTGA
EST: gi|351038515|gb|FQ464381.1|FQ464381
EST:     CTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAA                         GGCATGTATATCACGTTTTAAAGATTGCCCATTATGTGGAGCTGACATTGA
genomic: CTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAAgtaggcagac ... tgaaaattagGGCATGTATATCACGTTTTAAAGATTGCCCATTATGTGGAGCTGACATTGA